Simiduia litorea: R50072_16350
Help
Entry
R50072_16350 CDS
T10759
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
slio Simiduia litorea
Pathway
slio03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
slio00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
R50072_16350 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
slio03400
]
R50072_16350 (mfd)
Enzymes [BR:
slio01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
R50072_16350 (mfd)
DNA repair and recombination proteins [BR:
slio03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
R50072_16350 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
Motif
Other DBs
NCBI-ProteinID:
BFM11482
LinkDB
All DBs
Position
complement(1881375..1884827)
Genome browser
AA seq
1150 aa
AA seq
DB search
MDIANALRGLSPSLSDSTKFNQRWGELPGAATALAIALAAKQHPGLIVVVTPDSASAHQL
HDELTFFCQAETQVLSLPDWETLPYDTFSPHQDIVSERMRALYRLPTAVNSILVAPLTTL
MYRLPPQSFVSGNTLILKKGQRFDLNEQARLLEATGYHRVDTVFEHGEFAIRGSLMDVYP
AGSEWPLRIDLFDDEIESLRTFDPETQRTEAQVDSIELLPAREFPFTKAAISEFRVRWHE
RFDVDHKACPVYRDICDGIAPSGIEYYLPLFFEQCATLFDYLPAHTRLITFDGLTPLADR
FWREVTSRYESRKVDPERPLLAPSDIFVPTNELFNKINTLPRTELGIGDTKALPAIAPPA
VPVDAKAETPLLALSNYLLNKPGKLLFAVESAGRREILQELLRKIDITPTGCDNWAQFLD
SNEQLNIAVAALDRGLQLTSPNIAIITESQLFGERVQQRRRRKTSQDSDLAFKNLTELSI
GSPVVHIDHGVGRYQGLTTIDLDGQTQEFLQLNYANQAKLYVPVASLHLISRYSGAEENL
APLHKLGSDSWEKAKRKAAEKVRDTAAELLDIYARRAARKGFAFKDPGQAYEAFSASFPF
EETPDQEQAIHNVRKDMLANTPMDRLVCGDVGFGKTEVAMRAAFIAVQSGKQVAMLVPTT
LLAQQHYESFKDRFADWPVNIEVVSRFKTGKEIDAIADKLKDGKVDIIVGTHKLLQPDFN
YKALGLLIIDEEHRFGVRQKEALKSIRSEVDILTLTATPIPRTLNMSMAGIRDLSIIATP
PSKRLSIKTFIRPSDEALTKEAILRELLRGGQVYYVHNEVKSIEKVARDLQALVPEARIG
IGHGQMRERDLEKVMADFYHRRFNLLVATTIIETGIDVPSANTIIIDRADKFGLAQLHQL
RGRVGRSHHQAYAYLMTPNPKSLTKDAIKRLEAISQADTLGAGFTLATHDMEIRGTGELL
GDEQSGQIEAVGFSMYMDMLNRAVKAIQSGRQPDLDAPLGTAVEVNLRIPALIPDDYLPD
VHTRLIMYKRIANASDDQALRELQVEMIDRFGLLPDPIKNLFRTTSIKLNAERLGILKVE
AGPNGGKLEFAKEPNVDPLSIIKMVQTQPQKYQLAGASSFKFLHDMETSELRLSTTEQLI
ASLAPSQRTH
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
atggatattgcgaatgcactaagggggctaagccctagcctttctgactcaactaaattc
aaccaacgctggggcgagctacccggcgcggccaccgcgctagcgatcgcgctagcggca
aagcaacacccaggccttatcgttgttgtaacacccgattccgccagtgctcaccaactg
cacgatgagctgacattcttctgccaggcagagacccaagtactatcgctacctgattgg
gaaaccctgccctacgacaccttcagcccacaccaagatattgtctcagagcgcatgcgt
gcactttatcggctgcccaccgcggttaacagtatattggtcgcccctctcaccacattg
atgtaccggctgccgccgcaatcctttgttagcggcaacaccctgatactgaaaaagggc
caacggtttgacctaaatgagcaagcccggctactcgaagccacgggctaccatcgcgtc
gataccgtattcgaacatggcgaattcgccattcgcggctcactcatggatgtttatccg
gctggcagtgaatggcccctgcgcatcgacctattcgacgacgaaatcgaaagcctacgc
accttcgacccagaaacccagcgcaccgaagcccaagtcgatagcatagagctgctacca
gcgcgggaattccccttcaccaaggctgcaatcagtgaatttcgggtgcgctggcacgaa
cgcttcgacgtcgaccataaagcatgtccggtttatcgcgacatttgcgatggcatagcg
ccatcgggcatcgagtactatttgccgctattttttgagcagtgcgccaccctgtttgac
tatctgccagcgcacacacgcctaattaccttcgacggcctaacgccgctggccgatcgg
ttttggcgagaagtgaccagccgctacgaaagcagaaaggtggaccccgagcgcccactg
ctcgcgccgagtgatattttcgtacccacgaacgagttatttaataagattaatactctg
ccgcgtacagaactcggcataggcgacaccaaggcgttacccgccattgccccacctgcg
gtgccagttgatgcaaaagcggaaacgccactgctggcattgagcaactaccttctcaac
aaacccggtaaattactgttcgccgtcgaatcggctgggcgacgagaaatactacaagag
ctgctgcgcaaaattgatatcacacccaccggctgtgataactgggcacaatttctcgac
agcaacgaacagctcaacattgccgtcgccgcgcttgaccgaggcctgcaactcacgtca
cccaacatcgccatcatcacagagagccagttattcggcgagcgagtacaacaacggcgc
cgcagaaaaaccagccaagacagcgatctcgcctttaaaaacctaaccgaattaagtatt
ggctcgccggtggttcatatcgatcacggcgttggccgctatcagggcctaaccactata
gatctggatgggcaaacccaagagtttttgcaactcaactacgcgaatcaagcaaaactc
tacgtcccagtcgctagcctacatctcattagtcgctactccggcgccgaagaaaaccta
gcgccactacacaaacttggaagcgactcatgggaaaaagccaagcgtaaggcagctgaa
aaagtacgcgatacagcagcagagctgctcgatatttacgctcgccgcgccgcgcgcaaa
ggttttgcttttaaagaccccggccaggcctacgaggcattctcagcgtctttcccattt
gaggaaacgcccgatcaagaacaagctatccataacgtacgcaaagacatgctggccaac
acaccgatggatagattagtgtgcggcgatgttggtttcggcaaaacggaagtggcgatg
cgcgccgctttcatcgcggttcaaagcggcaagcaagtagccatgttggtaccaacaaca
cttttggcgcagcaacactatgaaagcttcaaagatcggtttgccgattggccggtcaac
attgaagttgtgtcgcgatttaaaaccggcaaagaaattgacgccattgccgacaaactg
aaagatggcaaagttgacattattgtcggcactcacaaattattgcagccggactttaac
tataaagccctaggcctgctcattatcgacgaggagcatcgcttcggcgttcggcaaaaa
gaagcattgaaatcgattcgctcagaagtggatatattaaccttaacggcaacacctatc
ccacgcacactcaacatgagcatggcgggaatacgcgatctatcaatcatcgcgacaccg
ccgtcaaagcgactctccatcaagacttttatacgcccttccgatgaagcactgaccaaa
gaggccatcttgcgcgaactgttgcgtggcggtcaggtatattacgttcacaacgaagtt
aaaagcatcgaaaaagtcgcgcgggacttacaagccttggtgccagaagctcgcataggc
attggtcatggtcaaatgcgcgagcgcgacctcgaaaaagtcatggcggatttttaccac
cgccgctttaacctcttagttgccaccaccattatcgaaacaggtatcgacgtacccagc
gccaataccatcattattgatcgcgccgataaattcggcctggcgcagctgcatcaacta
cgcggccgcgtcggacgctcccatcatcaagcctacgcctatttaatgacgcccaacccg
aaaagcctcaccaaggatgcgataaagcgtttagaggccatcagccaagccgacaccttg
ggcgctggcttcaccttagccactcacgacatggagattcgtggcaccggtgagttactc
ggcgatgaacaaagcggccaaattgaggcggttggctttagtatgtatatggatatgtta
aaccgcgccgtgaaggcaatccaatcaggccgacaaccagatctagatgccccacttggc
acggcagtcgaagtcaatttgcgcattcctgcactcatccccgatgactacttgcccgat
gtgcacacccggctaatcatgtataaacgcattgctaatgccagtgacgatcaagccctg
agagaacttcaagtggagatgatcgatcggtttggcctacttcccgaccctattaaaaac
ctctttcgaaccacgagcataaaacttaacgccgaacgtttaggtatcttaaaagtagag
gccggccctaacggtggcaaactcgaatttgctaaagaacccaatgtcgatccactgagt
attatcaaaatggtgcaaactcaaccacaaaaataccaactcgccggggcaagtagtttc
aaattcttgcatgatatggaaaccagtgagctaaggctaagtaccacagagcagttaatt
gctagcctcgcaccaagccagagaacccattga
DBGET
integrated database retrieval system
