Simiduia litorea: R50072_20280
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Entry
R50072_20280 CDS
T10759
Symbol
fadB_1
Name
(GenBank) fatty acid oxidation complex subunit alpha FadB
KO
K01825
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:
1.1.1.35
4.2.1.17
5.1.2.3
5.3.3.8
]
Organism
slio Simiduia litorea
Pathway
slio00071
Fatty acid degradation
slio00280
Valine, leucine and isoleucine degradation
slio00310
Lysine degradation
slio00362
Benzoate degradation
slio00380
Tryptophan metabolism
slio00410
beta-Alanine metabolism
slio00640
Propanoate metabolism
slio00650
Butanoate metabolism
slio00907
Pinene, camphor and geraniol degradation
slio00930
Caprolactam degradation
slio01100
Metabolic pathways
slio01110
Biosynthesis of secondary metabolites
slio01120
Microbial metabolism in diverse environments
slio01200
Carbon metabolism
slio01212
Fatty acid metabolism
Module
slio_M00087
beta-Oxidation
Brite
KEGG Orthology (KO) [BR:
slio00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00640 Propanoate metabolism
R50072_20280 (fadB_1)
00650 Butanoate metabolism
R50072_20280 (fadB_1)
09103 Lipid metabolism
00071 Fatty acid degradation
R50072_20280 (fadB_1)
09105 Amino acid metabolism
00280 Valine, leucine and isoleucine degradation
R50072_20280 (fadB_1)
00310 Lysine degradation
R50072_20280 (fadB_1)
00380 Tryptophan metabolism
R50072_20280 (fadB_1)
09106 Metabolism of other amino acids
00410 beta-Alanine metabolism
R50072_20280 (fadB_1)
09109 Metabolism of terpenoids and polyketides
00907 Pinene, camphor and geraniol degradation
R50072_20280 (fadB_1)
09111 Xenobiotics biodegradation and metabolism
00362 Benzoate degradation
R50072_20280 (fadB_1)
00930 Caprolactam degradation
R50072_20280 (fadB_1)
Enzymes [BR:
slio01000
]
1. Oxidoreductases
1.1 Acting on the CH-OH group of donors
1.1.1 With NAD+ or NADP+ as acceptor
1.1.1.35 3-hydroxyacyl-CoA dehydrogenase
R50072_20280 (fadB_1)
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.17 enoyl-CoA hydratase
R50072_20280 (fadB_1)
5. Isomerases
5.1 Racemases and epimerases
5.1.2 Acting on hydroxy acids and derivatives
5.1.2.3 3-hydroxybutyryl-CoA epimerase
R50072_20280 (fadB_1)
5.3 Intramolecular oxidoreductases
5.3.3 Transposing C=C bonds
5.3.3.8 Delta3-Delta2-enoyl-CoA isomerase
R50072_20280 (fadB_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
3HCDH_N
ECH_1
3HCDH
ECH_2
DUF5546
Motif
Other DBs
NCBI-ProteinID:
BFM11875
LinkDB
All DBs
Position
complement(2298140..2300290)
Genome browser
AA seq
716 aa
AA seq
DB search
MVYQGKSVAVRALDNGIAELCFDAQGESVNKFDVATVNELSEAITALEAVPDLRGVLATS
GKGVFIVGADITEFGGVFGAGPEAVIAHLRKNNENNNRLEDLKVPVVVAINGFALGGGLE
FCLACDYRIASSAAKIGLPETKLGLIPGWGGTVRLPRIAGVDTAAEWIASGKDQRADAAL
AAGVVDAVVEPELLREASLHALEQCINGGFDIRNRRARKTGAMLLNDTEALMAFETAKSF
IGAQAGRNYPAPVAAVKAMQKSAKLDRAGALAAEAQAFATLAQGTEAQALVGLFLSDQLV
AKKAKQWEKRADKKIARASVLGAGIMGGGIAYQSALKGTPIKMKDIAQSGIDLGLSEASK
LLTKQVERGRMKPAQMAEVLTRIEPCLSYQGFDTVDMVVEAVVENPKVKHAVLAEVEQAL
GDDAVIASNTSTISISYLAQALQRPENFCGMHFFNPVHAMPLVEVIRGDKTSDTAIARTV
AYANAMGKKAIVVNDCPGFLVNRVLFPYFAGFSMLLRDGADFQQVDRVMQAWGWPMGPAY
LLDVVGIDTAAHCEAVMAEGFPSRMGKTFKACTDLMYEAGRYGQKNAVGFYRYEADKKGK
PAKLVDEKAYQLLQPHCAEPKVFSDEDIIARMMVPMVTEMARCLEEGVVETAAEADMSLI
YGLGFPPFRGGVFRWVDSLGVQAVIDMANKYQALGELYQPTDGMLALAKSNKTYYA
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atggtctaccaaggtaaatcagtcgcggtgcgagcgctggataatggtattgccgaattg
tgctttgatgcccaaggtgaatcggtaaacaagtttgatgtcgccacagtgaatgagctg
agtgaagcgattaccgcgctggaggccgttcctgacttgcgcggcgtgttggcaacctcg
ggcaagggtgtgtttattgtgggtgccgatatcactgaattcggcggcgttttcggtgcc
ggtccggaagcggtaatcgctcacctgcgtaaaaacaacgaaaacaataaccgcctcgaa
gatctaaaagttcctgtagtggtggcgattaatggttttgcgctcggtggcggcttagag
ttttgcctagcctgtgactaccgtattgccagcagtgctgcaaaaatcggcctgcctgaa
acaaagttaggtttgatccccggttggggtggaacggttaggttgccgcgtattgcggga
gtcgataccgctgccgagtggatagcctcgggcaaggatcaacgcgccgatgccgcactc
gctgccggggtggtggatgctgtagttgagccagagttactgcgtgaagccagcctgcat
gcccttgagcaatgtatcaatggtggtttcgatattcgaaaccgccgcgctcgaaaaaca
ggcgccatgctactcaacgacacagaggcgctgatggcctttgaaacggcaaaatcattc
attggcgcgcaagccggtcgcaattatccggcgcccgttgccgcggtgaaggcgatgcaa
aaatccgccaagctagatagagctggcgccctggcggcggaagcacaagcttttgctacc
ttggctcagggcacagaggcgcaagcgctggtagggcttttcttgtccgatcaattagtg
gccaaaaaagccaagcagtgggagaagagggccgataaaaaaattgcccgcgcctccgtt
ttaggtgccggcattatgggtggcggtattgcctatcagtcggcattaaaaggcactcca
atcaaaatgaaggacatcgcccagtcgggaattgacttgggtttgtctgaagcctcgaag
ttgttaaccaaacaggttgagcgcgggcgcatgaaaccggcgcaaatggcggaggtttta
acccgtatcgagccttgtttaagttatcagggctttgacactgtcgatatggttgtggaa
gctgtggtggaaaacccaaaagtgaagcacgcggttttggctgaggttgagcaggctctg
ggtgacgacgcggtgattgcatcaaatacctccaccatttcgatcagttatttggctcaa
gctctgcagcggccagaaaatttctgtggtatgcactttttcaatcccgtccatgcgatg
ccattggttgaggtgatccgcggcgacaaaacctcagatacggccatcgcacgcacggtt
gcctatgccaatgccatgggtaaaaaagccattgtggtaaacgattgcccaggctttttg
gttaaccgggtgttgtttccctattttgctggcttttcgatgctgttgcgcgatggtgct
gattttcaacaagtcgatcgcgtcatgcaggcttggggttggcctatgggcccggcctat
ttacttgatgttgttgggatcgataccgctgcccactgcgaagcggtgatggcagaaggc
tttccttcgcgcatgggtaaaaccttcaaggcttgcacggatcttatgtatgaagccggt
cgatacggccagaaaaacgccgtggggttttatcgttatgaggccgataagaaaggcaag
cctgccaaattggttgatgaaaaagcctatcagctgttacagcctcactgtgccgagccc
aaggtgtttagcgatgaagacatcattgctcgcatgatggtgcccatggtgacggagatg
gctcgctgcttagaagagggcgtcgtagagacggccgctgaagcggatatgtcactcatt
tacggtttgggttttccgccctttagaggcggtgtgtttcgttgggttgatagtcttggt
gttcaagcggtgatcgacatggcgaataaatatcaagcgctgggcgaactttatcagcct
accgatggcatgttggcgctggcaaagtccaacaaaacttattacgcataa
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