Simiduia litorea: R50072_21190
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Entry
R50072_21190 CDS
T10759
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
slio Simiduia litorea
Pathway
slio03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slio00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
R50072_21190 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slio03019
]
R50072_21190 (recQ)
03400 DNA repair and recombination proteins [BR:
slio03400
]
R50072_21190 (recQ)
Enzymes [BR:
slio01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
R50072_21190 (recQ)
Messenger RNA biogenesis [BR:
slio03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
R50072_21190 (recQ)
DNA repair and recombination proteins [BR:
slio03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
R50072_21190 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
RecQ_Zn_bind
Helicase_C
HTH_40
ResIII
Rhodanese
HTH_28
Motif
Other DBs
NCBI-ProteinID:
BFM11966
LinkDB
All DBs
Position
2402965..2405088
Genome browser
AA seq
707 aa
AA seq
DB search
MNQAALTILNTTFGYANFRPPQDAIIDALIDGQDALVIMPTGGGKSLCYQIPAIARKGCG
VVISPLIALMQDQVSALEQLGVKAGFLNSTLSAADSQNIEQQLMSGDLDLLYIAPERLNQ
ARTINLLHQVPLALFAIDEAHCVSQWGHDFRSDYLQLGLLADQFPDVPRIALTATADSRT
QAEIIQRLHLQNAKQFVVGFDRPNIQYRITPKNNPRKQVLAFIRAEHSDDSGIIYCLSRK
KTEETAAFLSAEGMTALPYHAGLPAETRAANQRRFLREDNIIMVATVAFGMGIDKPDVRF
VAHLDLPKSIEAYYQETGRAGRDGAPATAWMAYGYQDVILLSQMMSQSEGSAEHKHAERQ
KLDAMLGLCEITSCRRQTLLRYFGEQDHVPCGNCDTCINPVATWDGTDAARKALSCVFRS
GQRFGVSHLVDILLGKENQKVLQFDHHKLTTFGIGKDLDANQWRSVFRQLVARGYLAVDS
TGFGGLRLEESCRDLLKGDERIQLRRDVKDVKTSKSKHSQQLAQADTALWDALRACRKQL
AEEHGVPPYVVFHDATLMEMVRYRPTSEQAMLAISGVGQSKWDKFGEAFIDVILRFDNDA
TNNQDSATLDTTAQLLQAQMTVEQIASHRGLAVETVYNHVAILLQDKRIALLDAIELDER
TLGQIQDEILQYDGGEEGFRFKPVFEALGGNYPYGLLKCVRVAMLNQ
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
atgaatcaagccgcactcacaatactcaacaccaccttcggttacgccaacttcaggcca
ccgcaagacgccatcatcgacgcacttatcgacggtcaggacgcacttgtcatcatgcct
acgggtggtggcaagtcgctgtgttatcagatcccggctatagcacgcaaaggctgcggc
gtggttatttccccgctgatcgcccttatgcaagatcaagtcagcgcgctagaacaactt
ggggttaaagccgggtttcttaactcaaccctatcggccgccgatagccaaaacatcgag
cagcaattgatgtctggcgatctcgacctgctgtatattgcaccggaacgcctgaaccaa
gcgcgcaccatcaacttgctacaccaagtaccgctggcgcttttcgccattgatgaggcc
cactgtgtgtcgcaatggggtcacgactttcgctccgattacctgcagctgggcttgctc
gccgatcaatttcccgatgtaccccgcattgccctaaccgccacggctgacagccgaact
caggcggaaatcattcaacgcctacacctacaaaatgccaagcaatttgtggtcggcttc
gaccggcccaatattcaataccgcattacgccaaaaaataatccgcgcaagcaggtgctg
gcatttattcgcgcggagcacagcgacgactccggcataatctactgcttatcgcggaaa
aaaacagaggaaacagcggccttcttaagtgccgaaggcatgaccgcactgccctatcac
gccggcctgcccgctgaaacacgggcggcaaatcaacgccggtttttgcgcgaagacaac
atcatcatggttgccaccgtagcctttggcatgggtattgataaacccgacgtgcgcttt
gttgcccatttggacctacccaagagcatcgaggcctactaccaagaaacgggccgcgcc
gggcgcgacggtgcaccggccaccgcttggatggcctatggctaccaagatgtgatttta
ctcagccaaatgatgagtcagtcagagggctcagccgagcacaagcacgccgagcgacaa
aaactcgatgccatgctcggcctgtgcgaaatcaccagttgccgccggcaaacgctgttg
cgctattttggagaacaagatcatgtgccttgtggcaattgcgacacctgcataaatccc
gtggccacttgggacggtaccgatgccgcgcgcaaagcgctgtcctgcgtattccgctcc
ggtcaacgctttggcgtttcgcacctagtggacattttattgggtaaagaaaaccaaaaa
gtcctgcagtttgatcaccataaactaaccacttttggcataggtaaagatctcgacgcc
aaccaatggcgctccgttttccggcaattagtggcccgtggctacctcgccgtggacagc
accggctttggtggtttgcggctagaagaaagctgtcgcgatttactcaaaggcgatgaa
cgtattcagttgcgacgcgacgtcaaagacgtaaaaaccagcaagtccaaacacagccaa
caattggcacaagccgataccgctttgtgggatgccctacgtgcctgcagaaagcaattg
gcggaagaacatggcgtgccgccctatgtggtctttcacgatgccaccttaatggaaatg
gtgcgctaccgccccacctcagagcaagccatgctcgccattagcggtgtgggccaatcg
aaatgggacaagttcggcgaggcgtttatcgacgttattttgcgcttcgacaacgacgcg
acaaacaaccaagacagcgcaaccttagacaccactgcacaactgctacaagcacaaatg
acagtggagcaaattgccagtcatcgcggactcgccgttgaaaccgtgtacaaccatgtc
gccattttactgcaagataaacgcattgccttgttggatgccatcgaactcgacgagcgc
acattaggtcaaattcaagacgaaattttgcaatacgacggcggcgaagagggctttcga
tttaaaccggtgttcgaggcgctcggcggaaactacccctatggcctactaaaatgcgtg
cgggttgccatgctcaatcaataa
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