Simiduia litorea: R50072_24030
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Entry
R50072_24030 CDS
T10759
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
slio Simiduia litorea
Pathway
slio03030
DNA replication
slio03430
Mismatch repair
slio03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
slio00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
R50072_24030 (dnaE)
03430 Mismatch repair
R50072_24030 (dnaE)
03440 Homologous recombination
R50072_24030 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
slio03032
]
R50072_24030 (dnaE)
03400 DNA repair and recombination proteins [BR:
slio03400
]
R50072_24030 (dnaE)
Enzymes [BR:
slio01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
R50072_24030 (dnaE)
DNA replication proteins [BR:
slio03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
R50072_24030 (dnaE)
DNA repair and recombination proteins [BR:
slio03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
R50072_24030 (dnaE)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
BFM12250
LinkDB
All DBs
Position
complement(2731463..2735077)
Genome browser
AA seq
1204 aa
AA seq
DB search
MRASFVHLRLHTEFSLADSVVRIGGLITRLKELHMPACGVTDLTNFYGLIKFYTKCEGSG
IKPIIGADFQLADEDGNPTLLTLFAMNNQGYKNITELISRAWQHGQHHGIAKIQRSWVSE
HAEGVIALSGGRYGDIGKALLAGRAAQAVELLHAWQRDFPNRFYLELTRTGRENEEGYLH
QAIDLATQCQCPVVATNDVRFLHADEFEVHEARVCIGEGRALDDPRRERRYSEQQYLRSA
DEMAELFSDIPEALANTLEIAKRCTVDIQLGTYFLPDYPIPENVDQGPIFAIFSQDFMRT
EAVNAMASSWAGREQTPEYAEALRVNFFFQKVTYEGLEWRLERILDKNSADYAERRQLFI
DRLKFELDIIMQMGFPGYFLIVMDFIQWAKDNGIPVGPGRGSGAGSLVAYAQKITDLDPL
EYDLLFERFLNPERVSMPDFDVDFCMENRDKVIAYVADKYGRDAVSQIITFGTMAAKAVV
RDVARVQGKSYGLADKLSKMIPPTPGMTLKQALEEEPMLNEFLAADGEAQEIWETAVKLE
GLTRNVGKHAGGVVIAPTKLTDFAPLYCDETGAGLVTQFDKNDVESAGLVKFDFLGLRTL
TIIDWAVKMIDRDRRLTGESPLDISALPLDDEATFKLLKRAETTAVFQLESRGMKDLIKR
LQPDNLEDMIALVALFRPGPLQSGMVDDFINRKHGRAKVAYPDATYQHESLKPILEPTYG
VIVYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEEMAKQRSTFEEGAASQGIDPTLAM
KIFDLVEKFAGYGFNKSHSAAYALVSYQTAWLKAHYPAHFMAATMSSDMDKTDKVVTFIE
ECREMGLTLMPPDVNSGEFMFNVNPQGQIVYGLGAIKGLGEGPVDNIIAARAEGGAFTSL
FDFCARVDPRKVNKRALEALVRSGAFDSIGPQQNLDYDRAVLLAALGEAVKAAEQSHANA
NAGMMDLFGEVVPTASQENGDVYSEFRQVRSFTMRERLEGERDTLGLYLTGHPIDEYQRE
LKYLVSNRIADLKPEKSNQRIAGLVVAFRVMKTKRGDTMAFVSLDDRSGRLEIALFSDTY
NNYRDKVVKDALLVIEGQVSHDDYSGSLKMRAESVSTLAEARSGLARGIHMEWQAEQVAD
GHLAQLRGLLNNHRGGNCPVTVDFRNKSARGRIHFGNEWQVNASEELLTALREIFGTEKV
RMVY
NT seq
3615 nt
NT seq
+upstream
nt +downstream
nt
atgcgtgcatcattcgttcatttgcgtttacacacagagttttccttagccgacagcgtg
gtgcgtatcggcggtttaattacgcgcttaaaagaattgcatatgccggcgtgcggcgtc
actgatctcaccaatttttatggcttgatcaagttttataccaagtgtgagggcagcggt
atcaagcccattattggcgctgattttcaattggccgacgaagatggcaaccccaccttg
ttgacgctgtttgcgatgaataaccaaggctataaaaacatcactgagcttatttcacgc
gcttggcaacacggtcaacaccacggcattgccaaaattcagcgcagctgggtgagcgag
catgccgagggtgttattgcactctcgggtgggcgctatggcgatataggtaaggcatta
ctggcggggcgcgccgcacaagcggttgagttattacacgcctggcagcgcgattttccc
aatcgtttttacttagaattaacgcgcactgggcgcgaaaacgaagagggctatttgcat
caggccattgacttggcgacccagtgccagtgccctgtggtggctactaatgatgtgcgt
tttttgcatgccgacgaatttgaggtgcacgaggcgcgggtgtgtatcggcgagggtagg
gcactcgacgacccccggcgcgagcggcgttacagcgagcagcaatatttgcgctcggcc
gacgaaatggcggaactgttttccgatattcctgaggctttggccaataccctagaaatt
gccaagcgctgcacggtcgatatacagctggggacttactttttgccagactatccgatt
ccggaaaacgttgaccaaggccctatttttgctattttttcacaagactttatgcgcacc
gaggcggttaacgccatggcctcaagttgggccgggcgcgaacaaacgcctgaatacgcc
gaggcgctacgggttaatttcttctttcagaaagtaacatacgagggcttggagtggcgc
cttgaacgcattcttgacaaaaactcggccgattatgccgagcgccgtcagttgtttatc
gatcggctcaagttcgagctcgatatcatcatgcagatgggctttcccggttactttctg
atcgtgatggatttcattcagtgggcgaaagataacggcattcccgtgggtcctgggcgt
ggttctggtgccggttcactggtggcttacgcacaaaaaattaccgatctcgatccactc
gaatacgatctgctattcgagcgattcttaaaccctgaacgtgtttctatgcccgacttc
gacgtcgatttctgtatggaaaaccgcgacaaggttatcgcttacgtggccgataaatac
ggtcgcgatgccgttagccagattattacgttcggtaccatggcggcaaaagcggtggtg
cgcgacgtagctcgtgtacagggtaaaagctacgggctagccgataaattatcgaaaatg
attccgcccacgccgggtatgacgcttaaacaagcgctcgaagaagagcccatgttgaac
gagtttctggcggccgatggcgaggcgcaagaaatttgggaaaccgccgttaaactcgaa
ggccttacccgcaatgttggcaagcacgctggtggcgtcgtgattgcgcccaccaagctg
accgattttgcgcccctgtactgcgatgaaacgggcgcgggcttagtgacgcagttcgat
aaaaacgatgtcgaatcggcgggcctggtgaagtttgacttcttgggcttgcgcacgctc
accatcattgattgggcggtgaaaatgatcgatcgagatcgccgcctcaccggtgaatca
ccgctcgatatttcggcgttaccgctggacgatgaagctacgtttaaattattaaagcgg
gccgagacaacggctgtcttccagctcgaatcgcgcggcatgaaagatctgatcaagcgc
ttacagccggataacctcgaggacatgattgccttggtggcactatttcgcccaggccct
ttgcaatcgggcatggtggatgatttcatcaaccgtaagcacgggcgcgcgaaagtggcc
tatcccgatgccacctaccagcacgaaagcctgaagccaattctagagcccacctacggc
gttattgtctaccaagagcaggtcatgcagatcgcccaggtgttggccggctacaccctt
ggcggcgccgatatgttgcgtcgtgctatgggtaagaagaagcctgaggagatggccaag
cagcgctcgacgtttgaagaaggtgccgccagtcagggcatagatccgacgctggcgatg
aagattttcgacttggtagaaaagtttgccggctatggctttaacaaatcccactcggca
gcttacgccttggtgtcctaccaaacggcgtggttaaaggcccattacccggcgcatttt
atggctgccactatgtcttccgacatggacaaaaccgataaggtggtgacctttatcgaa
gagtgtcgggagatgggtttgaccctgatgccgccagatgtgaatagcggcgagttcatg
tttaacgtcaacccccaaggccagatcgtgtacggtttaggtgctattaaggggttgggc
gaaggcccagtggataatattatcgctgcgcgcgctgagggcggggcctttaccagcctg
ttcgatttctgtgcccgcgtcgacccgcgcaaggtgaataagcgcgcgctcgaggcattg
gtgcgctccggtgcttttgacagcattggcccacagcaaaatttagactacgaccgcgcc
gtgttgctcgcggcgctaggggaggcggtaaaggctgccgagcagagccatgccaacgcc
aacgcgggcatgatggacttgtttggcgaggtcgtgccaacagcgagccaagaaaatggc
gatgtgtatagcgagtttcgccaagtacgtagcttcaccatgcgcgagcgcttggagggt
gagcgcgataccttagggctttacctcaccggccatcctatcgatgagtaccagcgcgag
ctcaaatatctagtttcgaaccgcatcgcggatttgaaaccggaaaaatccaatcagcgc
attgctgggctagtggttgcctttcgagtgatgaaaactaagcgtggcgataccatggcg
tttgtttctttggacgatcgttccggccggcttgaaattgcgttgttttccgatacctat
aataactaccgcgataaggtggttaaggatgccttgctggttatcgaggggcaggtgagt
catgacgattactcgggctcattgaagatgcgcgccgagtcagtgagtacgctggctgag
gcgcgctccgggctggctcgcggtattcacatggagtggcaggccgagcaggttgccgat
ggtcatttagcgcaattgcgtggcctgttgaataaccaccggggcggaaattgccccgtt
accgtggattttcgcaacaagagcgctcgaggtcgcatacactttggcaacgaatggcaa
gtgaatgcctcagaggaattactgacggcgctacgggaaatttttggcactgaaaaagtg
cgtatggtttactaa
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integrated database retrieval system
