Simiduia litorea: R50072_27260
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Entry
R50072_27260 CDS
T10759
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
slio Simiduia litorea
Brite
KEGG Orthology (KO) [BR:
slio00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slio03019
]
R50072_27260 (hrpB)
Enzymes [BR:
slio01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
R50072_27260 (hrpB)
Messenger RNA biogenesis [BR:
slio03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
R50072_27260 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
DEAD
Helicase_C
CON_HrpB
ResIII
Flavi_DEAD
AAA_19
AAA_30
HA2_C
Motif
Other DBs
NCBI-ProteinID:
BFM12573
LinkDB
All DBs
Position
complement(3112204..3114762)
Genome browser
AA seq
852 aa
AA seq
DB search
MHVLPINTVLPDLLAALRTGDDCILEAPPGAGKTTYVPLALLTEDWLKGQKILVLEPRRL
AARAAASRMASLLNEAVGERVGFRVRMESNVSSRTRIEVVTEGILTRMLQDDPSLEGYGI
LLFDEFHERSLDGDLGLSLALMARDLYGDLRQQPMKILVMSATLDGQDISRLLDHAPIIR
SEGRSFPIQIHYGDAWQFDQDLVARTVSTVLLALQNHGSSLLVFLPGQSEIRRVAEALAS
RLDSAASAFDKVILAPLFGDLSLEQQRKAIEPCAPGFRKIVLATNIAETSLTIEGVDVVI
DSGLYRQAAFNPNTGLTQLVTKRISKASSTQRAGRAGRLAPGVCYRLWSETQQQELAAFT
PPEIEQSDLSPLALQLFRWGVASPTEMRWLTPPPAGAWQQGVDLLLRLQAVALDERGVSQ
ITDQGRLMSDVPAHPRLAHMLVCAQGLGEVAQAALIAALLSERDINAGGADIQLRLDWLN
GERQGPSGAAKRLRQLASQFERALGRSAERRLVDASGTDFSLTPDQRAGLLLAFAFPDRI
AQRRSAQGHHYRLSNGRSAVLAETDSLRNQPWLVVAETGGHTGERIFLAASLAPSLFDGP
LKALVSVEQSLGWDNNAERFLAQQRRCIGALTLASQQLPPLKGKEKQLALLQLVRERGLG
LFEWSPAARQLRARVLLVREHTQPSLAGEVQPWPDFSDDGLLSSLHDWLAPYLDNINKLQ
DFKSLDIHDLLANQLDWHQQQALNQLAPTHWLVPSGNAVAIDYDHTPPVLAVKLQEMFGC
EQTPALVNGRVTLLLHLLSPARRPIQITQDIAGFWRGSYQAVKKDMKGRYSKHPWPDDPL
QALATAKVKNKM
NT seq
2559 nt
NT seq
+upstream
nt +downstream
nt
atgcacgttttacccattaacactgtgctacccgacttacttgccgccttacgcaccggt
gacgactgcattttggaggcccccccgggtgccggtaaaaccacctatgttcccctcgca
ctcttgaccgaggattggctcaaggggcaaaaaattctcgtgctggaaccgcgccgttta
gcggctcgtgccgcggctagccgcatggcaagtctgttgaatgaagccgtgggcgagcgg
gtagggtttcgcgtacgcatggaatctaacgtcagtagtcgcacgcggattgaggtagtt
accgaaggtattctcacgcgcatgttgcaggatgacccaagccttgagggttatggcatt
ctactgtttgatgaatttcacgagcgcagtttggatggcgacttaggcttgtcgctcgcc
ttgatggcacgggatctctatggtgatcttcgtcaacagccgatgaaaatactcgtcatg
tcggcgacgctcgacggtcaagatattagccgcctgctcgaccatgcccccattattcgc
agcgaggggcgaagctttcctattcaaatccactacggtgacgcttggcaatttgatcaa
gatctggtggcgcgcactgtgtctacggtgttgctcgcgttgcaaaatcacgggtcaagc
ctgctggtatttctacctgggcaaagcgagattcgccgcgtcgccgaggccctagcgagt
cgtttggatagcgccgcctcggcgtttgataaggttatcttggcgcccctatttggcgat
ttaagtcttgagcagcagcgcaaagccatagagccctgcgcgccgggtttccgtaaaatt
gtgctggctactaacattgcggaaaccagtttgacgattgagggcgtcgatgtggtgata
gatagcggcttgtatcgccaggccgcgtttaatcccaatacgggtttgacgcagctcgtt
accaaacgtatctccaaggcttcgagtacgcagcgcgcaggtcgcgccgggcgtttagcg
ccgggtgtttgctatcggctttggagcgagacgcaacagcaagagttggccgcatttacg
ccgccggaaatagagcaatcggatttgtcgcctctggcgttgcaattgtttcgctggggc
gtggcaagtccaacggaaatgcgttggttgacaccgccaccggctggcgcttggcagcag
ggcgtggatttattgttgcgcttacaagcggttgcgcttgatgagcgcggcgtgtcgcag
ataaccgatcaaggtcggctgatgagcgacgtgccagcccatccgcgtttggcgcatatg
ctggtgtgcgcgcaaggtctcggtgaggtagcgcaagcggccttgatagccgcgctgtta
agtgagcgcgacatcaacgctggcggcgccgatattcaactgcgcctcgattggctcaac
ggcgagcgccaagggccgagcggtgcggcgaaacgcctgcggcaactcgccagccagttt
gaacgcgcattggggcgaagtgccgagcggcgattggttgacgcgagtggaactgacttt
tctttaacgccagaccagcgcgcaggtttgctgctagcgtttgcttttcccgatcgcatc
gcccagcgacgctctgcccaaggccaccactatcgcctgagtaatggcagaagtgccgtg
ttagctgaaaccgatagcctgcgcaatcagccttggttagtggtggcggaaaccggaggc
cacacaggcgagcgtatttttttagcggcgtccttagcgccaagtttatttgacgggccg
ttaaaagccttggttagtgtcgagcaatccttgggctgggacaataacgccgagcgtttt
ttggcgcagcaacgccgttgcattggcgcactcaccctagccagccaacagttgcctccg
ttgaagggcaaagaaaagcagctggcgttgctgcagttggtgcgcgagcgaggcttaggt
ctattcgaatggagtcccgcggcgcggcaattgcgtgctcgggtgctgttggtgcgtgaa
catacacaaccttcgctcgctggcgaggtgcagccttggcccgacttttcagatgacggc
ttgttgagcagcctgcatgattggttagcaccttaccttgataatattaataagttgcaa
gattttaagtcactcgatattcatgatctgttggccaatcaactcgattggcatcagcaa
caagcgttgaaccaactagcgccaacccattggctggtgccgtctggcaacgccgtggct
attgattacgatcacacgccaccagtgctggcggttaagttgcaggaaatgtttggctgc
gagcaaacaccggccttggtgaatgggcgggtcacgttactgttacatttgttgtcgcca
gcccgtcgaccaatacagatcacacaagatatcgccggtttctggcgcggtagttaccaa
gctgttaaaaaagatatgaaggggcgctattcgaaacacccgtggccggatgatccattg
caagcgctggcaacagcgaaagtaaaaaataaaatgtag
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