Simiduia litorea: R50072_27730
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Entry
R50072_27730 CDS
T10759
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
slio Simiduia litorea
Pathway
slio03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slio00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
R50072_27730
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slio03019
]
R50072_27730
Enzymes [BR:
slio01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
R50072_27730
Messenger RNA biogenesis [BR:
slio03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
R50072_27730
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
ERCC3_RAD25_C
HI1480
UvrD-helicase
Cas3-like_C_2
AAA_22
Sacchrp_dh_NADP
P-loop_SecA
DUF2529
Motif
Other DBs
NCBI-ProteinID:
BFM12620
LinkDB
All DBs
Position
3166762..3168159
Genome browser
AA seq
465 aa
AA seq
DB search
MRFADLGLSAPILEAVAEQGYETPSPIQAQAIPAVIAGKDVMAAAQTGTGKTAGFTLPIL
ERLIKGNRAPANHVRVLVLTPTRELAAQVGESVANYGKHLPLRSAVVFGGVSINPQMMQL
RKGVDVLVATPGRLLDLYSQNAVKFTHLEMLVLDEADRMLDMGFIHDIKRILKLLPDRRQ
NLLFSATFSDEIRTLAKGLVHNPVEIDVAPRNTTVETVKQWLSPVDKGKKTALLIHLVKQ
HNWHQVLVFSRTKHGANKIAKQLEDAGINSAAIHGNKSQNARTKALAEFKSNKVRVLVAT
DIAARGIDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSADEIKQLQDIER
LIQQVIAREVVPGFEAANPVPETKLNTRPFKPKKPKPPKTEHRDGYRASGSAKKTGARSS
EGGRSNSPHRNTNNTSNKPSGAKTGASKANNGPRRSPKPATSGNR
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atgcgttttgccgatttgggcctttcagcccccattctcgaggccgttgccgaacaaggt
tacgaaacaccctcacccattcaagcccaagctattcccgccgtcatcgcgggtaaagat
gtgatggcagccgcccagaccggaaccggcaaaacggcaggctttaccctgccgatatta
gaacgcctgattaaaggcaaccgcgcaccggctaatcatgtgcgcgtgctggtgttaacg
cctacccgcgaattggcggcgcaagtgggcgaaagcgtcgccaactacggcaagcaccta
cccttgcgctcagcggtggtgtttggcggcgtcagcatcaacccacagatgatgcagctg
cgcaaaggcgtcgatgtgctggtcgccacacccggtcgactgctcgatctctacagtcag
aacgccgtaaaatttacccatttagaaatgttggttttagatgaagccgatcgcatgctc
gacatgggtttcattcacgacatcaagcgcattttaaaactactgcccgaccgtcgtcag
aaccttttattctcagccactttttccgacgaaattcgcaccctcgccaaggggcttgta
cacaatcctgtcgaaattgacgtagcgccgcgcaacaccaccgtagaaacggttaagcag
tggttgagccctgtcgataaaggcaaaaagaccgcgctacttattcatttagtgaagcag
cataactggcatcaagtactggtgttttcacgcaccaagcacggtgccaataaaattgcc
aaacaactcgaagatgccggtataaattcagccgcgattcacggcaacaagagccaaaat
gcccgcactaaagccctggccgaatttaagagtaataaagtgcgggtgctggttgccacc
gacattgccgcgcgcggcatcgatatcgatcagttgccacaagtggttaactttgattta
cccaacgtgccggaagattacgtacatcgtatcggccgcaccggtcgcgctggcgccagt
ggtcaagcggtttcattggtgagcgccgatgaaattaaacagctgcaagatatcgagcgt
ttaattcagcaagtgattgcgcgcgaagtggtgcccggttttgaagcggccaacccagtg
cccgaaaccaagctcaacacccggccattcaaacctaaaaagccaaaaccacctaaaacc
gagcaccgcgatggctatcgcgctagcggctcggcgaaaaagaccggcgccagaagcagc
gaaggcggacgtagtaacagcccacaccgcaacaccaacaacaccagcaacaagccgagt
ggcgcaaaaactggcgcgagcaaggctaacaatgggccacgtagaagtcctaagccagcg
acaagtggcaatcgctaa
DBGET
integrated database retrieval system
