Simiduia litorea: R50072_29410
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Entry
R50072_29410 CDS
T10759
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
slio Simiduia litorea
Pathway
slio03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slio00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
R50072_29410 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slio03019
]
R50072_29410 (pnp)
03016 Transfer RNA biogenesis [BR:
slio03016
]
R50072_29410 (pnp)
Enzymes [BR:
slio01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
R50072_29410 (pnp)
Messenger RNA biogenesis [BR:
slio03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
R50072_29410 (pnp)
Transfer RNA biogenesis [BR:
slio03016
]
Prokaryotic type
tRNA degradation factors
R50072_29410 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
OB_RRP5_4th
S1_RRP5
KH-I_KHDC4-BBP
KH_2
Motif
Other DBs
NCBI-ProteinID:
BFM12788
LinkDB
All DBs
Position
complement(3332756..3334894)
Genome browser
AA seq
712 aa
AA seq
DB search
MNPVIKSFQYGNQTVTLETGRVARQASGAVIASIGDTSVLCTVVGAKDAKDGIDFFPLSV
HYVEKAYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPKGFKNEVQVVCTVISAD
KDVDPDICAMIGTSAALSISGIPFAGPIGCARVGYTQADGYLLNPNYSVLKNSELDMVVA
GTADAVLMVESEANELPEDIMLGAVLYAHQEQQAVIQAINELARDAAKPVWDWSAPVENA
DLKAALAKGFEDSIGVAYRITDKAKRYDRLNELRTQAIAELVDAESGVSKDDVREMFGKI
EKNIVRTRVVAGEPRIDGRDNKTVRGISCEVGVLGKAHGSALFTRGETQALVVATLGSAR
DAQIIDALEGERKDPFMLHYNFPPYSVGECGRMGATGRREIGHGRLARRGVAAVLPNMAD
FPYSLRVVSEITESNGSSSMASVCGTSLALMDAGVPLKAPVAGIAMGLVKESNGFAVLTD
ILGDEDHLGDMDFKVAGTANGVTALQMDIKIQGITEEIMDIALEQALHARLHILAEMNKV
ISTARGEISDNAPRFEVIKIDPDKIRDIIGKGGAVIRSMTEETGASIDIEDDGTVRIFGA
NGEVIRDVLDRIGAITAEAEIGAIYEGTVVRIVDFGAFINFLPGKDGLVHISQIADERVN
DVNDYLKEGQVIRVKCLDVDQRGRIKLSIKEAQRDENPAPAEAPAAEEQQPE
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
gtgaatcctgtaatcaaatcgttccaatacggaaatcaaactgtaaccctagaaactggc
cgcgttgctcgtcaagcgagtggtgcggttatcgccagcattggcgatacctcagtactg
tgtactgttgtgggcgccaaagatgctaaagatggcatcgactttttcccactgtcagtt
cactacgtagaaaaagcttacgctgccggtaaaattcccggtggatttttcaagcgcgaa
ggtcgcccaagcgagaaagaaaccttaacctcgcgtctgatcgatcgccccatccgtcca
ctgttccccaagggctttaaaaacgaagttcaggtcgtgtgtacggttatatctgctgat
aaagatgtcgatccagatatctgcgccatgattggcacctcagcagcgctgtctatttct
ggtattccgtttgctggccctattggctgtgcacgcgtgggttatacccaagccgatggc
tacctgttgaaccctaactacagtgtgttgaaaaactccgagttagacatggttgttgcc
ggtaccgcagacgccgtactaatggttgagtctgaagcaaacgaattgccagaagacatc
atgttaggcgcggtactttacgcccaccaagaacagcaagcggttattcaagcgatcaat
gaattagcacgcgatgccgccaagcctgtttgggattggtctgcaccggttgagaatgct
gacctgaaagcggcattggccaaaggctttgaagattccatcggtgtggcttatcgcatt
accgataaagccaagcgttacgatcgcttaaacgaattgcgcacccaagccattgcagaa
ttggttgatgcagagtctggcgttagcaaagatgatgtgcgcgaaatgttcggcaaaatt
gaaaagaacatcgtgcgtactcgcgttgttgctggcgagcctcgtatcgacggtcgcgac
aacaaaactgttcgcggcattagctgtgaagtaggtgtattaggtaaagcacacggttct
gccttgttcacccgcggcgaaacacaggctttggttgtggccaccttaggctcagcgcgc
gatgcacaaatcatcgacgcccttgaaggcgagcgcaaagacccctttatgttgcactac
aacttccctccctactcagtgggtgagtgtggtcgtatgggcgccactggtcgtcgcgaa
atcggtcatggccgcttggcgcgtcgcggtgttgccgctgttctgccaaacatggcggac
ttcccttatagcctgcgcgttgtgagtgaaattactgaatctaatggttcgtcttccatg
gcctctgtgtgtggtacaagccttgcgctaatggatgctggtgtgccattgaaggcgcca
gtagccggtatcgctatgggcttggttaaagaatcaaatggttttgccgttttaaccgat
attcttggtgacgaagatcatctcggcgacatggatttcaaagtagccggtaccgccaac
ggtgttaccgcgctgcagatggatatcaaaatccagggcattaccgaagagattatggat
atcgcactagagcaagctctacacgcgcgcttacatattcttgccgaaatgaacaaagtt
atttctaccgcacgcggtgaaatttctgataacgcaccacgcttcgaagtgatcaagatt
gatccagacaagattcgcgacatcatcggtaaaggcggcgctgttatccgctctatgacc
gaggaaacgggcgcttctatcgatatcgaagacgatggcactgtgcgcatctttggtgct
aacggtgaagtgattcgcgatgtgttggatcgcattggcgcaatcacggctgaagccgag
attggtgctatctacgaaggtactgtggttcgtatcgtagactttggtgcctttattaac
ttcttgccaggtaaagatggtttagttcacatttcacaaatcgctgatgagcgcgttaat
gatgtgaatgactacttgaaagaaggtcaggttattcgtgtgaagtgtttggatgtagat
cagcgtggtcgtattaagctgtctatcaaagaagcacagcgcgacgaaaacccagcaccg
gccgaagcgccagctgctgaagagcaacagccagaataa
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