Simiduia litorea: R50072_30470
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Entry
R50072_30470 CDS
T10759
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
slio Simiduia litorea
Pathway
slio03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
slio00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
R50072_30470 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
slio03400
]
R50072_30470 (sbcB)
Enzymes [BR:
slio01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
R50072_30470 (sbcB)
DNA repair and recombination proteins [BR:
slio03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
R50072_30470 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
R50072_30470 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
R50072_30470 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
BFM12894
LinkDB
All DBs
Position
complement(3445822..3447237)
Genome browser
AA seq
471 aa
AA seq
DB search
MNSLFWHDYETWGANPAQDRPAQFAGVRTDEDLNVIGEPLMFYAKPTCDLLPHPEACLIT
GITPQKALAEGISEPEFIAKIHAEFSQPGTCGVGYNSLRFDDEVTRYTLYRNFYDPYERE
WKNGNSRWDLIDVVRMTYALRPDGIEWPVKEDGSPSFKLEDLARANHLLHDAAHDALSDV
YATIALARLIKTKQPKLYDYAYGLRLKDAVQQQFDWINKKPLLHVSSRFPAAQGCSALVM
PLAPHPINKNAIIVYNLAVDPTPLMNLNAADIRARVFCADADLPQGAARIPLKLVHANKS
PMLAPLSMLTESVANRLHIDRALCERHWAMLRNADLNSVLREVFSQNDFAPNSDPEQQLY
QGFLPNEDKPLMQQVRDSAPEFLANIQFKDQRLNALLMRYRARHFFHTLSEEEQFEWEEQ
CYMRLTEPAQGAGIVLDAYFDRIAELAQQPNQTERNQMILRELDAYGASLA
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atgaatagcctcttttggcatgactatgaaacttggggtgcaaaccccgcacaagatagg
ccggcgcaatttgcgggggtgcggacagacgaagatctgaatgttattggcgagccactg
atgttttacgccaagcccacgtgcgacttattgccgcacccagaagcctgcttgattact
ggcatcaccccacaaaaagccttggccgagggcattagcgaaccggaattcatcgccaaa
attcacgctgaatttagtcaaccgggcacctgtggcgtaggttataacagtttacggttt
gacgacgaggtcactcgctacaccttataccgcaatttttacgatccctacgagcgcgag
tggaaaaacggcaattcccgttgggatctcatcgatgttgtgcgcatgacctatgcacta
aggccagacggcattgagtggccggtcaaagaggacggcagtccaagttttaagttggag
gatttggcgcgcgccaatcacttgctacacgacgctgcgcacgatgcactgtcagatgtg
tatgccaccattgccttggcgcgtttaattaaaaccaagcagccaaagctatacgattac
gcctacggtttacgtttgaaagatgctgttcagcagcaatttgattggatcaataaaaag
ccattgttgcacgtgtcgtcgcgctttcccgcagctcagggttgcagtgcgttggtaatg
ccgttagcgccgcatcccattaataagaatgccattattgtttataatttggctgttgat
ccaacgccgttgatgaatttaaacgccgccgacattcgcgctagagtattttgtgccgac
gcagatttgccacaaggtgccgcgcgtattccgctcaagctggtacacgccaataaaagc
ccgatgctcgcaccgctctccatgctcaccgagtcagtggctaatcggttacatattgac
cgcgctctgtgcgagcgacattgggccatgttgcgcaacgccgatctcaatagcgtgctg
cgcgaggtgttcagccaaaacgattttgctcccaatagtgaccctgaacagcaactgtat
caaggctttctacccaatgaagacaagccgttaatgcagcaggtacgcgacagtgcgccc
gaatttctagcgaacatccagttcaaagatcagcgtttaaacgcattgttaatgcgctat
cgcgcgcgacatttttttcacaccttgagcgaagaggagcagtttgagtgggaagagcag
tgctacatgcgcttaaccgagccagcgcagggcgccggtatcgtgctggatgcctatttc
gaccgtatcgccgagttggcacagcagccgaatcaaaccgagcgcaatcaaatgattttg
cgtgagctggacgcttacggcgcgtctttggcttaa
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