Simiduia litorea: R50072_33860
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Entry
R50072_33860 CDS
T10759
Name
(GenBank) hypothetical protein
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
slio Simiduia litorea
Pathway
slio00040
Pentose and glucuronate interconversions
slio01100
Metabolic pathways
slio02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
slio00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
R50072_33860
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
R50072_33860
Enzymes [BR:
slio01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
R50072_33860
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-ProteinID:
BFM13233
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Position
complement(3809248..3810975)
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AA seq
575 aa
AA seq
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MRESRIARPIALALLLGLGVTACGGGGSGSGDQTATPTPTSTPTPTPTPTPTPTPITLTD
GGFAGFNYDLTGGAYGLVYTVNNGLDLQAKLDEAKAAGQPITLYIDGVITPFNNGGTNLD
IAIKDMNNVSLIGVGAKGEFDGIGLIIRRANNIIVQNLTFHEAWPGQERDAIGIEGDDDG
STTSHIWIDHCELYNSLNVDKDYYDGLIDTKNGAKLVTISNNYLHDAWKTSLHGHTENDT
NPDTDRLVTFHHNRFENLSARVPLYRHGKGHVYNNYFNNIDSSAVNTRQGAEMLIENNIF
ENTHNPIVSFYSPMVGYWHIAGNVMGNGVTWSSNNGTDITAQSGNSTSSYTVPYTYNLDA
VENLKAKIIANAGVGKIDQSQLDIPAPVTPSDEVPVPEEVIIEDVALPYGENFAPDTATF
FSNSYRDVSGGPGAGVAMNYKVTGTATLASGALSLTGARVSIGNTTPGVSTSAGDTATTG
VFDLSAAYTVSFTVVNVAGDMTKKFQLFVDNNTASSSQSIWGGASRFHDIALGDLVAGQT
YVINGKLASSTSFITLRTEGSGTIQLDDFLIELAP
NT seq
1728 nt
NT seq
+upstream
nt +downstream
nt
atgcgtgaatccaggattgcgcgccccattgcccttgcgttgctgttaggcctgggcgtt
accgcctgcggcggcggcggctcgggttctggtgaccagaccgcgacaccaacgcctaca
tcgacaccaacaccaacaccaacaccaacaccaacaccaacacccatcacattgaccgac
ggcggttttgccggtttcaattacgacctgaccggcggcgcctatggtttggtgtatacc
gtcaataatggtttggatttacaagcaaaattagacgaggcaaaggcggcaggccaaccc
attaccctctatatcgacggcgtcattacgccgtttaataatggcggcacaaatctcgat
attgcgattaaagacatgaacaatgtctcgctcatcggcgtgggggctaagggtgaattc
gacggtatcggtttaattattcgccgcgccaataacattatcgtgcagaacctcaccttt
cacgaagcctggccgggccaagagcgcgatgctattggtatcgaaggcgatgacgatggc
agcacaactagccatatttggattgatcattgcgaattgtataattcgctcaatgtggat
aaagattattacgatggtttgattgatactaaaaatggcgcgaaattagtcaccatttct
aataattatttacatgatgcgtggaaaacctcactgcatgggcatacggaaaatgacacc
aaccccgacaccgatcgcctagtgacctttcatcacaaccggtttgaaaatttatcggct
cgcgttccgctttatcgtcatggcaaaggccatgtatacaacaactattttaacaatatt
gactcgtcagcagtgaatacccggcagggtgccgaaatgttgattgagaataatattttt
gaaaacactcataacccaatcgtgtctttctattcgcctatggtgggctactggcatatc
gccggcaacgtgatgggcaatggcgtcacctggtcgtctaacaatggcaccgatattacc
gcgcaaagtggtaattcgacatccagctatacggtgccttatacctataacctcgatgcg
gttgaaaatttaaaagcgaaaatcattgccaatgccggtgtggggaaaattgaccaatca
caactggatattcctgcacctgtgacgccgagtgatgaggtgccggtacctgaagaggtt
atcatcgaggacgtggctctgccttacggtgaaaactttgcacccgatacggcgactttt
tttagcaacagctatcgagatgtatcgggtggaccgggtgcgggtgtcgcgatgaattat
aaagtcaccggcacggcaacgcttgctagcggcgcgctcagtttaaccggtgcgcgggtc
agtattggcaatacaacccctggcgtaagcaccagcgcgggtgatacggcgacaaccggc
gtgttcgatttgtcggcggcctacacggtgagttttacagtggtaaatgttgccggcgat
atgacaaaaaagtttcagctctttgtcgataacaacacggcctcgagtagtcagtctatt
tggggtggcgcttcgcgttttcacgacattgcgctaggcgatctagtggcggggcaaact
tacgtgattaacggaaagttggcttctagcacatcgtttattactttgcgcactgaaggc
agcggtaccattcaacttgatgactttttgattgaattggcgccttaa
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