Simiduia litorea: R50072_34440
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Entry
R50072_34440 CDS
T10759
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
slio Simiduia litorea
Brite
KEGG Orthology (KO) [BR:
slio00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
slio03016
]
R50072_34440
Enzymes [BR:
slio01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
R50072_34440
Transfer RNA biogenesis [BR:
slio03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
R50072_34440
Prokaryotic type
tRNA splicing ligases
R50072_34440
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Paralog
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GFIT
Motif
Pfam:
RtcB
Hexapep
Motif
Other DBs
NCBI-ProteinID:
BFM13291
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Position
3902207..3903430
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AA seq
407 aa
AA seq
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MNNYDVLHTPGKVPVKAWTRGVTFDPNARQQVENLASMPFIHKWIAVMPDVHLGKGATIG
SVIPTLGAVIPAAVGVDLGCGMMAVKTSLTAAQLPDSLNNLRLEIERRVPHGRNPQGRGK
RDAGAWHNLPEDVQQAWRPLNDGFDRLCEKHPFLAKTNNINHLGTLGTGNHFIEICLDEA
DAVWVMLHSGSRGVGNRIGTHFIEQAKKDMTRWFINLPDKDLAYLPEGSETFNDYVTAVA
WAQDFARVNREVMMARTLQALREIIAAPFVASMAAVNCHHNYISREQHYGENVWVTRKGA
VRARLGEMGIIPGSMGARSFIVRGLGNAESFCSCSHGAGRVMSRTEAKRRVSLDEHLQAT
AGVECRRDESVIDETPSAYKPIEQVMAAQADLVEIVHTLKQVVCVKG
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atgaacaactacgacgtactgcatacccccggcaaggtgcccgtgaaggcttggacccgc
ggcgtaacctttgaccccaacgcgcgccagcaggtggaaaaccttgccagcatgcctttc
atccacaagtggattgccgtgatgccagacgtgcacctaggcaaaggcgccaccattggc
agcgtgatccccacattgggtgccgtaattccggccgccgttggggtggacttgggctgc
gggatgatggcggtgaaaaccagcctcacggctgcgcagctgccagactcgctcaacaat
ttgcggcttgaaattgaacggcgcgtgccgcacggccgcaacccgcaagggcgcggcaag
cgcgatgcgggcgcctggcacaacttgccggaagatgtgcagcaggcatggcgaccgctg
aatgacggcttcgaccggctgtgcgaaaagcacccgtttctggctaaaaccaacaacatt
aatcatctcggcacactgggtactggcaaccactttattgagatttgcctagatgaagcc
gacgccgtttgggtgatgttgcacagcgggtcacgcggggttggcaaccgtatcggcacg
cactttattgagcaagccaagaaggatatgacgcgctggtttatcaacctgccagacaaa
gacttggcttatttgccggagggcagcgaaacctttaacgactacgtaacagcggtcgcc
tgggcgcaagatttcgcccgcgtgaatcgcgaagtgatgatggcgcgcaccttacaagcg
ctgcgagaaataatcgccgcgcccttcgtcgccagcatggccgcggtgaattgccaccac
aattacatcagccgcgagcaacactacggtgaaaatgtgtgggttacgcgcaagggtgcg
gtgcgcgcacgccttggtgagatgggcatcattcccggaagcatgggcgcgcgttcgttc
attgtgcgcgggctcggcaatgccgagagtttttgcagttgcagccacggcgccggccgc
gtgatgtcgcgcaccgaggccaagcgccgcgtttcactggacgagcacctgcaggctacc
gcaggtgtggaatgccggcgcgacgagagcgtgattgatgaaacgccgtcggcctacaag
cccatcgaacaggttatggccgcgcaagcggacctagtggaaattgtgcacacactgaaa
caagtggtgtgcgtgaaggggtaa
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