Simiduia litorea: R50072_34600
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Entry
R50072_34600 CDS
T10759
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
slio Simiduia litorea
Pathway
slio02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
slio00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
R50072_34600 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
slio03021
]
R50072_34600 (rpoD)
Transcription machinery [BR:
slio03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
R50072_34600 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
CDC45
Cwf_Cwc_15
DNA_pol_phi
Motif
Other DBs
NCBI-ProteinID:
BFM13307
LinkDB
All DBs
Position
complement(3921284..3923152)
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AA seq
622 aa
AA seq
DB search
MVDIGKQQQSRIKELIARGKEQGYLTYSEVNDHLPEDISDPDQVEDIIQMINDMGIKVFE
TAPDADTLLMTDGDSSADEIAAAEAAAALAAVETEAGRTTDPVRMYMREMGTVELLTREG
EIAIAKRIEEGIRELMHSLACWPGAVEQVIGEYDLIAKEERRMVDVIAGWLDPADEVPTA
AEQAQRREDAAAAAAESNDDDDDDDDDSDSSDDEDSNEGGVDPEEARVRFEALREALAKY
EKSVAKNGRNHKSTDKLVNEVGEIFKFFKLPPRQFDPLYARVRGMLDRVRAEERAIMYLC
VRSAGMPRKTFIKEFPGAETNEDWVADIVKKKRDYADALKAVEPEILRSQRKLQQIEMEA
SLELSAIKEINRRMSIGEARARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIG
LMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRVSRQML
QEMGREPTPEELGERMDMPEDKVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDNTITSP
VDSATVEGLIEATRDVLSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIE
AKALRKLRHPSRSDHLRSFLDE
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atggttgatattggcaaacagcagcaatcgcgaattaaagagctgattgctcgcggtaag
gaacagggttacctcacctattccgaagtgaatgaccacttacccgaggatatttccgat
ccagatcaggttgaagacatcattcagatgatcaacgacatgggtatcaaggtgttcgaa
accgcacctgatgcagataccctgttgatgaccgatggcgacagctctgccgatgaaatc
gccgccgccgaagccgctgcggccttggctgcggtagaaaccgaagccggtcgcaccact
gaccccgtgcgtatgtacatgcgcgaaatgggcaccgtcgagcttctgacccgcgaaggc
gaaattgccattgccaagcgcatcgaagaaggcattcgcgagttgatgcattccctcgct
tgctggcccggtgcggttgagcaggttattggtgaatacgatctgattgccaaagaagag
cgtcgcatggtcgacgttatcgccggttggttagaccctgccgacgaagtccccacagct
gccgagcaagcacagcgccgcgaagatgccgccgctgccgccgccgaaagcaatgacgac
gatgacgacgatgacgacgatagcgattcgtccgatgatgaagacagcaacgaaggtggc
gtagacccagaagaggcgcgcgtgcgtttcgaggcgctgcgcgaagccttagccaagtac
gaaaaatcagtggcgaaaaacggccgcaaccacaagtccaccgataagttggtgaacgaa
gtgggcgaaatcttcaagttcttcaaattgcccccacgccagtttgatcccctgtatgcg
cgcgtgcgcggtatgttggatcgggtgcgggcagaagagcgcgcgatcatgtatttgtgc
gtgcgcagcgctggcatgccacggaaaacctttatcaaagagtttcccggcgccgaaacc
aatgaagattgggtagccgacatcgttaagaagaagcgcgattacgccgatgcgttgaag
gccgtcgagccggaaattttacgcagccagcgcaagcttcagcagattgaaatggaagcc
agtttggaactgtctgccattaaagaaattaaccgtcgcatgtctatcggtgaggctcgt
gcccgccgcgccaagaaagaaatggttgaagctaacttgcgcttggtaatttcgattgcg
aaaaagtacaccaaccgcggtttgcaattcttggatctgattcaggaaggcaacatcggc
ttgatgaaagcggtagataaatttgaataccgtcgcggctataagttctcgacctatgcc
acctggtggattcgtcaggcaattacccgctccatcgccgatcaggcgcgcaccatccgt
attccggtacacatgattgagactatcaacaagctcaaccgtgtatcccgtcaaatgctt
caggaaatgggtcgggaacccacgccggaagagttgggcgagcgcatggacatgccagaa
gacaaagtgcgtaaagtgctgaaaattgccaaagagcctatctccatggaaacgccgatt
ggcgatgatgaagattcgcatttgggtgatttcatcgaagataacaccatcacctcgccg
gtagattcagccacggttgaaggcttgattgaagccacgcgcgatgtgttgtcgggccta
accgcacgcgaagcgaaagtattgcgtatgcgcttcggtatcgacatgaacaccgatcac
accctcgaagaagtgggcaagcagttcgacgtcacgcgcgagcgtattcgtcagatcgaa
gccaaggcactgcgcaaattgcgtcacccttcgcgctcagatcatttgcgtagcttctta
gacgagtaa
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