Shewanella litorisediminis: JQC75_00445
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Entry
JQC75_00445 CDS
T07182
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
slit
Shewanella litorisediminis
Pathway
slit03030
DNA replication
slit03410
Base excision repair
slit03420
Nucleotide excision repair
slit03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
slit00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JQC75_00445 (polA)
03410 Base excision repair
JQC75_00445 (polA)
03420 Nucleotide excision repair
JQC75_00445 (polA)
03440 Homologous recombination
JQC75_00445 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
slit03032
]
JQC75_00445 (polA)
03400 DNA repair and recombination proteins [BR:
slit03400
]
JQC75_00445 (polA)
Enzymes [BR:
slit01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
JQC75_00445 (polA)
DNA replication proteins [BR:
slit03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
JQC75_00445 (polA)
DNA repair and recombination proteins [BR:
slit03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
JQC75_00445 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JQC75_00445 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
Motif
Other DBs
NCBI-ProteinID:
QRH01952
LinkDB
All DBs
Position
complement(98255..101026)
Genome browser
AA seq
923 aa
AA seq
DB search
MPDIASNPLILVDGSSYLYRAYYAPPHLTNSKGEATGAVYGVVNMLRSLLSRYRPTQMAV
VFDAKGPTFRNEMYQEYKAHRPPMPDDLRSQIAPLHRIIKALGIPLISIPGVEADDVIGT
IAMQAGNEGRSVLISTGDKDMAQLVNEHITLINTMTDTILGPEEVTTKFGVGPELIIDLL
AMMGDKADNIPGLPGVGEKTALAMLTGAGGVAKLLSDPDCVTELGFRGAKTMAAKIRDNA
EMLELSYKLATIKTDVELEQDWHQLSLSEPNRDELIACYGEMEFKRWLAEVLDNKSPIGA
RSSVSTDSQETSEAPVAAAIETQYETLLTEAELDAWLACLSKAELIAVDTETTSLDYMQA
ELVGLSFATEPGKAAYLPLGHDYPGAPDQQPREATLAKLKPLLENPDIKKVGQNLKYDMS
VLANAGIQLRGVAFDTMLESYVFNSVASRHDMDGLALKYLGHKNIGFEDIAGKGAKQLTF
NQIALEQAAPYAAEDADITLRLHQHLWPRLIKEEGLERVFTELELPLIDVLSDIERRGVL
IDSMLLGQQSEELARKIDELEQKAHEIAGEPFNLSSTKQLQELFFTKLGYPVIKKTPKGA
PSTAEEVLVELALDYPLPKIILEHRSLTKLKSTYTDKLPLMINGRTGRVHTSYHQANAAT
GRLSSSDPNLQNIPIRTEEGRRIRQAFVAPEGKRILAADYSQIELRIMAHLSQDEGLLRA
FAEGKDIHRATAAEVFDVAFETVTSEQRRRAKAVNFGLIYGMSAFGLARQLDIPRNEAQS
YIDTYFKRYPGVLKYMEETRAMASEQGYVETLFGRRLYLPEIRDRNAMRRQAAERAAINA
PMQGTAADIIKKAMIAIQHWIKTETQGEIQMIMQVHDELVFEVDADKADALKDKVCELMA
QAASLDVPLLAEAGLGDNWDQAH
NT seq
2772 nt
NT seq
+upstream
nt +downstream
nt
atgcctgatattgccagcaacccgctcatccttgtggatggttcttcctacctgtatcgc
gcctattatgcacccccacatttaaccaactccaagggcgaagccaccggcgccgtctat
ggcgtggttaacatgctgcgcagtctgctgtcccgctatcggccaacgcaaatggcagta
gtattcgatgcaaaggggccgacattccgcaatgaaatgtatcaggaatacaaggctcac
cgcccaccgatgccggatgatctgcgcagccagattgcaccgctgcaccgcattatcaag
gcgctgggcattcccttaatcagtattcccggcgtagaagccgacgacgtaatcggtact
atcgcgatgcaagccgggaatgaaggccgcagcgtactcatcagtaccggcgataaagac
atggcacagctggttaatgagcacatcacccttattaacaccatgaccgacaccatactc
ggcccagaagaagtgacgaccaagtttggtgtggggccagagcttatcatcgacctgctg
gcgatgatgggcgataaggcagataacatccccggcctgcccggagtcggtgaaaagacc
gcgctggccatgctgaccggcgccggaggcgtagccaagctgctctccgaccccgactgt
gtcactgagctcggttttcgcggcgccaaaaccatggccgcaaaaattcgcgacaatgcg
gaaatgttggagctgtcctacaagctcgctaccatcaagaccgatgttgaactcgagcaa
gattggcaccagttatcattgagtgagccaaaccgtgacgaactcattgcctgctatggt
gagatggagttcaaacgctggctggcggaagtgctggacaacaagtcgcccattggcgcc
aggtcctcagtatccacagacagccaggagaccagtgaagcacctgtcgctgccgccatt
gagactcagtacgaaaccctgctgaccgaagccgagctggatgcgtggctggcgtgcctc
agtaaggccgaactcatcgccgtggataccgaaaccaccagtctcgactatatgcaggcc
gagttggtcggtctgtcgtttgccaccgaacccggcaaggctgcgtacctgccgctgggt
cacgactatcccggcgcaccggatcagcagccacgtgaagccaccctggctaagttaaag
cccctgcttgaaaatccggacattaaaaaggttggccaaaacctcaagtacgatatgagt
gtgctggccaacgcgggtatccagctcaggggtgtggcctttgacaccatgctggagtcc
tacgtgttcaactcggtggcgagccgccacgacatggacggtcttgccctcaagtatctg
gggcacaaaaacatcggcttcgaagacattgccggtaaaggcgctaaacagctcacattc
aatcaaattgccttggaacaggccgcaccctatgcggcagaagatgccgatatcacctta
aggctgcaccagcatctgtggccacgcctgattaaagaagaaggcctggaacgtgtattt
accgagctcgagctgccactgattgatgtgctctcagacatagaacgtcgcggcgtgctc
attgacagcatgttgctcggtcaacaaagcgaagagctggcacgcaagattgatgagctt
gagcaaaaggcccatgagattgccggtgagccatttaatctgtcgtctaccaagcagttg
caggaactgtttttcaccaagctgggttatcccgtcatcaaaaagaccccaaagggtgcc
ccttcaactgccgaagaggtgctggttgagttggcgctggactatccgctgccgaaaatt
atcctcgagcaccgcagccttaccaagcttaagagtacctatacagacaagctgccgctg
atgatcaacggccgcacgggccgggttcacaccagctaccatcaggccaacgccgctacg
ggtcgtttgtcgtccagcgacccgaacctgcagaacatccctattcgcaccgaagaaggc
cgtcgtattcgtcaggcctttgtggcgcccgagggcaagcgcattcttgcggctgactat
tcacagattgaactgaggatcatggcgcacctgtcgcaggacgagggcttgctgcgcgct
tttgccgaaggcaaagacattcaccgggctaccgccgcagaagtatttgatgtggcattt
gaaacagtgacgtctgagcagcgccgccgcgccaaggcagtgaatttcggccttatttat
ggcatgtcagccttcggcctggcgcgccagctggatatcccccgcaatgaggcacaaagc
tatatagatacctacttcaagcgctaccccggcgtgctcaagtacatggaagaaacccgc
gccatggcctccgagcagggctatgtggagactctatttggccgccgcctgtatttgccg
gaaattcgtgaccgcaacgccatgcgcaggcaggctgccgagcgcgctgccattaacgcc
cccatgcagggcacggccgctgacatcatcaagaaggccatgattgctattcaacactgg
attaagaccgagacccagggtgaaatccagatgatcatgcaggtacacgatgaactggtg
tttgaagtagatgccgataaggccgatgcactgaaagacaaggtgtgtgaactgatggcg
caggcggcaagcctcgacgtgcccctgctggccgaagcaggccttggcgacaactgggat
caggcccactga
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