Shewanella litorisediminis: JQC75_01305
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Entry
JQC75_01305 CDS
T07182
Name
(GenBank) AMP-binding protein
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
slit
Shewanella litorisediminis
Pathway
slit00061
Fatty acid biosynthesis
slit00071
Fatty acid degradation
slit01100
Metabolic pathways
slit01212
Fatty acid metabolism
slit02024
Quorum sensing
slit04146
Peroxisome
Module
slit_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
slit00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
JQC75_01305
00071 Fatty acid degradation
JQC75_01305
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
JQC75_01305
09145 Cellular community - prokaryotes
02024 Quorum sensing
JQC75_01305
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
slit01004
]
JQC75_01305
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
slit04147
]
JQC75_01305
Enzymes [BR:
slit01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
JQC75_01305
Lipid biosynthesis proteins [BR:
slit01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
JQC75_01305
Exosome [BR:
slit04147
]
Exosomal proteins
Exosomal proteins of breast milk
JQC75_01305
Exosomal proteins of breast cancer cells
JQC75_01305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C_3
Motif
Other DBs
NCBI-ProteinID:
QRH02097
LinkDB
All DBs
Position
complement(269850..271505)
Genome browser
AA seq
551 aa
AA seq
DB search
MQATIKTPVEMLEHWVQTQGDKVYLRQPVNGQYRDFSWRDVKRQMEQIAGSLRHLGLVPG
DKVAVLSKNCAEWFITDLALMHGGYISVPIYPTANADTIRYVLEHSGSKAIFIGKLDHWA
EQEAGVGGSILRMSFPYDTMPTQYGWEQLLTMGQPLTDAPLPAMEDTMTLIYTSGSTGSP
KGAIQTFGSYCWTCNAVVRDLKTDGEDRLLSYLPLAHITERVAIEGSSFYSGSAVAFVES
LDTFVADVQRMRPTVFFSVPRLWTLFQKNIIDKVGFDKLNFLLKLPLISYLVKRKIHKGL
GLDKCRLLGSGSAPIPPSLIQWYHSIGLNICEAWGMTENCAYSIINYPFDASKIGTVGKP
VEGCLVRRSESGELMVKSPGLMSGYYQQPEATAAAFDEDGFFYTGDLCAIDEDGCVSITG
RVKDNFKTAKGKYVAPVPIERKLAQDPHVELICVIGSGLPHPIALVQLSDGATLQAREEV
RVSIKATLDAVNPNLESHETVDAVVVVTEPWTIENDVLTPTLKIKRHVLESRFSAKVDGV
RGAKVIWEDEI
NT seq
1656 nt
NT seq
+upstream
nt +downstream
nt
atgcaagccactatcaagactcctgtagagatgctcgaacactgggtgcagacccagggt
gacaaggtttacttgcgccagccggtgaacggccaataccgtgatttcagctggcgggat
gtgaaacgccagatggagcaaattgccggctcgctcaggcatcttggtctggtgcccgga
gacaaggtcgccgtactgtccaagaactgcgccgagtggtttataaccgatctggcgtta
atgcatggcggttatatcagcgtacctatctaccccacggccaatgccgataccatccgc
tacgtgcttgagcacagtggctccaaggctattttcatcggtaagctggatcactgggcc
gagcaggaagccggtgttggcggcagtattttgcgcatgtcgttcccctacgacaccatg
ccgacccaatacggctgggaacagctgcttaccatggggcaaccgctgactgacgcgccg
ctgcctgccatggaagataccatgaccctgatttacacctcgggctccaccggcagtccc
aaaggcgccattcaaacctttggcagctattgctggacttgtaacgccgtggtgcgggat
ctcaagaccgacggtgaagatagattgttgtcttacctgccgctcgcccatatcaccgaa
cgggttgccatcgaaggctcatccttctattccggcagcgctgtggcttttgtggagagc
ctggatacctttgtcgccgacgtgcagcgcatgcgcccaaccgtattcttttcggtgcca
cgtctgtggaccctgttccagaaaaacattatcgacaaggtgggcttcgataagctcaac
ttcctgctcaagttgcccctcatcagctatctggtaaaacgcaaaattcacaaggggctt
gggctggataagtgccgtctgctgggttcaggttctgcgcctattccaccttcacttatt
cagtggtaccacagcattggccttaacatctgtgaagcctggggcatgaccgaaaactgt
gcgtactccatcatcaactaccccttcgacgccagcaaaataggcaccgtgggtaaaccg
gtggaaggctgcctggtgcgtcgcagtgaaagcggtgaactcatggtcaagagtcccggg
ctgatgagtggctactatcagcagcccgaagccacggcggccgccttcgatgaagatggc
ttcttctacaccggcgacctgtgcgccatcgatgaggatggttgcgtcagtatcacgggt
cgggtaaaggacaacttcaaaactgccaagggcaaatacgtggcgcctgtgcccatcgag
cgcaagctggctcaggatccccatgtggagctgatttgcgtcattggctccggtctgccg
caccccatagcgctggtgcagctgtcagacggtgccaccctgcaggcgcgtgaagaagtg
cgggtctccatcaaggccactctggatgcggtaaacccgaatctggagtcccacgaaacc
gtggatgccgtggtcgtggtgactgagccctggaccatcgaaaacgacgtgctcacccca
acgcttaaaatcaaacgtcatgtactggaaagccgcttctcggcgaaggtcgacggcgta
cgcggtgccaaggttatctgggaagacgaaatttaa
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