Shewanella litorisediminis: JQC75_02005
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Entry
JQC75_02005 CDS
T07182
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
slit
Shewanella litorisediminis
Pathway
slit03420
Nucleotide excision repair
slit03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
slit00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JQC75_02005 (uvrD)
03430 Mismatch repair
JQC75_02005 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
slit03400
]
JQC75_02005 (uvrD)
Enzymes [BR:
slit01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JQC75_02005 (uvrD)
DNA repair and recombination proteins [BR:
slit03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JQC75_02005 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
JQC75_02005 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
PcrA_UvrD_tudor
DUF4391
AAA_22
DEAD
ResIII
Motif
Other DBs
NCBI-ProteinID:
QRH02223
LinkDB
All DBs
Position
443925..446102
Genome browser
AA seq
725 aa
AA seq
DB search
MDVSFLLDGLNDKQREAVAAPQSSMLVLAGAGSGKTRVLTHRIAWLLQVENQSPYSILAV
TFTNKAAAEMRERVEKIVGHNTGRMWIGTFHGLAHRLLRTHWQDAGLPQSFQIMDSDDQQ
RLLKRILKSMNLDEKQYPPRLVAGYINGKKDQGLRPGHIDAGPFPMEQKLLELYRIYQDS
CDRAGLVDFAEILLRAHELWLNKPHLLAHYQDRFRHILVDEFQDTNAIQYAWIRVLAGNT
GHVMIVGDDDQSIYGWRGAQVENLHRFLQDFPGANTIRLEQNYRSTGNILKASNELIANN
PDRMGKELWTEDKDGEPISLYCAFNEMDEARFIVGRISDWQDKGGMLGECAILYRSNAQS
RVLEEALLHKGMPYRIYGGLRFFERQEIKDAMGYLRLISNRDDDAAFERVVNTPARGIGE
RTLDILRSTARKEQLTLWQTSLRLLEEKVLSGRAANAVKGFLDLIVQLRADTDELPLYRM
ADHVIQHSGLKGMYEAEKGENAQARVENLEELVTAARSFEMPEELEDMGELNAFLSHAAL
EAGEGQADAHTDAVQLMTLHSAKGLEFPMVFMAGVEEGIFPSKLALEEGDRLEEERRLCY
VGMTRAMQKLYITYAESRRIYGREDYARPSRFIREIPPEYVEEIRLKAQVSAPLVANRFA
HAQQTFNDSGLKISGRVRHFKFGEGTVTNYEGSGPQARVQVQFDDFGSKWLVVSYAKLES
LGARG
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atggacgtttcttttttgctggatggcctgaacgataagcagcgcgaagccgtggctgca
ccccagtccagcatgctggtgttggctggtgccggcagtggcaagacccgggtgttgacc
caccgtatcgcctggttgttgcaggtggaaaaccaaagtccctattcgatactggcggta
acctttaccaataaggccgcggccgaaatgcgtgagcgggtcgagaaaattgtcggtcac
aataccggccgcatgtggataggtaccttccacggtctggcccaccgcctgctgcgtacc
cactggcaggatgcaggcctgccacaaagcttccagatcatggactcggacgaccagcaa
cgtttgctgaaacgcattctcaagagcatgaatctggacgaaaaacagtatccgccccgc
ttggtggctgggtacatcaacggcaaaaaagatcagggtttgcgcccgggccacatagac
gccggtcctttccccatggagcaaaaactgcttgagctgtaccgcatctatcaggatagc
tgtgaccgggctgggttggtggattttgccgaaatactgctgcgcgcccatgagctgtgg
ctcaataagccccatctgctggcccattatcaggacagattccgccatattctggtggac
gagtttcaggataccaacgccattcagtacgcctggatccgggtgctggcaggcaacacg
ggtcatgtgatgattgtaggggacgacgaccagtccatttacggctggcgtggtgcccag
gtcgagaacctgcatcgctttttgcaggactttcccggcgccaacaccattcgactggag
cagaattaccgttccaccggcaatatcctcaaggcttccaacgaactgatcgccaacaac
cccgaccgtatgggcaaggagttgtggaccgaagacaaggacggtgagcccatttccctc
tactgcgccttcaacgagatggacgaggcccgttttattgttggccgcatcagcgattgg
caggacaagggtggcatgctcggtgagtgcgccatactgtaccgctccaacgcccagtcg
cgggtgttggaggaagccttgttgcacaagggcatgccttatcgtatttatggtggactg
cgcttcttcgagcgccaggaaatcaaggatgccatgggctacttgcgtcttatctccaac
cgcgacgacgacgccgccttcgaacgggtagtcaataccccggcccggggcataggtgaa
cgcaccctggatattttgcgcagcactgcccgcaaagagcagcttaccctgtggcagacc
tcgctgcgcctgctcgaggaaaaggtgctgtcgggccgtgccgccaacgcggtgaaaggc
tttttggatttgattgtgcagcttcgagctgacaccgacgagttgccgctgtaccgcatg
gctgatcatgtgattcagcattccgggctcaaaggcatgtatgaggccgaaaagggtgaa
aacgcccaggcccgggtggaaaaccttgaagaacttgtcacggccgcccgcagttttgaa
atgccggaagagctggaggacatgggcgagctcaatgcctttttgtcccatgcggcactg
gaagcgggtgaaggtcaggccgatgcccacacggacgcggtgcagctgatgacgctgcac
tcggccaaggggctggaatttcccatggtgtttatggccggggtggaagagggcatattc
cccagcaaactggcactggaggagggcgatcgcctcgaagaggagcgccgcctgtgctat
gtgggcatgacccgggcgatgcaaaagctctatatcacctatgccgagtcacggcgcatc
tatggccgtgaggactatgccagaccctcacgctttatccgcgaaattccccccgagtat
gtggaggaaattcgccttaaggctcaggtgtctgcgcccctggtggccaatcgttttgct
cacgcccagcaaacctttaatgattccggcttaaagattagcggccgtgtacggcatttt
aagtttggtgaaggcacggtcaccaactacgagggcagtggcccacaggcgagggttcag
gtgcagtttgacgatttcggcagcaagtggctggtggtgagctatgccaagctggagtcc
ctgggagcccgaggataa
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