Shewanella litorisediminis: JQC75_02455
Help
Entry
JQC75_02455 CDS
T07182
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
slit
Shewanella litorisediminis
Pathway
slit03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slit00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JQC75_02455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slit03019
]
JQC75_02455
03009 Ribosome biogenesis [BR:
slit03009
]
JQC75_02455
Enzymes [BR:
slit01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JQC75_02455
Messenger RNA biogenesis [BR:
slit03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JQC75_02455
Ribosome biogenesis [BR:
slit03009
]
Prokaryotic type
rRNA helicases
JQC75_02455
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
Cas3-like_C_2
HD_4
HEM4
Motif
Other DBs
NCBI-ProteinID:
QRH02306
LinkDB
All DBs
Position
complement(548272..550203)
Genome browser
AA seq
643 aa
AA seq
DB search
MSSNEKTFRELGLTESVLRALDELGYETPTPIQAASIQPLMSGQDILGQAQTGTGKTGAF
ALPLLCSVDADLNAPQILVLAPTRELAVQVAEAFTSYAKHMKGFHVLPIYGGQSMYQQLQ
ALRRGPQVVVGTPGRVMDHMRRGTLKLDSLKALVLDEADEMLKMGFIDDIEWILEHTPES
RQLALFSATMPEQIKRVANKHLSNPVNISIAASHTTVDSIEQRFVQVSQHNKLEALVRVL
EVENTEGIIIFVRTRNSCMELAEKLEARGYAASPLHGDMNQQARERAVDQLKSGKLDILI
ATDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTI
ERATNSRISPMKVPSPESVAERRLSRLGEQVAGILANEHLDFMKGAVASLCQQLEVDTEQ
LAAALLHQVQLERPLQLNPMHERQRDNFDERTGRGQNDRAERGDRGDRSDRNERRRDSRP
LPGNFGSADTLKDNPDISMKRYLIDVGRDHNVGVGNIVGAIANEANIDSRYIGQIQLYDA
VTTVDLPDGMPKEVLQHLKKVRVCGKPLNIREVSNDGSDEIPVSNGPVPKRPRKPSGDRP
ERGERKFNDRGGDRGDRGGDRKFGERKSFDKKPASKPRRPKED
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atgtcatccaatgaaaagactttccgcgaactcggtctgaccgagtctgttttgcgtgcc
ctcgacgagctgggttatgaaacccctacgcccatccaagccgccagtattcaacctctg
atgtccggccaggacattctgggtcaggcacaaacaggtaccggtaaaaccggtgccttc
gccctgccactcttgtgcagtgtcgatgccgatctgaatgctccacaaattctggtgctg
gcccctacccgcgaactggcggtacaggttgccgaagctttcaccagctatgccaagcac
atgaaaggtttccacgtactgcctatttacggtggccagagcatgtatcagcagctccag
gcactgcgccgtggtccacaggtggttgtgggtaccccaggccgtgtgatggaccatatg
cgtcgtggcaccctgaagctcgactctctgaaagccctggtgctggatgaagccgatgaa
atgctgaaaatgggctttatcgacgatatcgagtggatcctcgagcacactcctgagagc
cgtcagctggcgctgttctctgccaccatgccagagcaaatcaagcgcgttgccaataag
cacctgagcaatccggtcaacatcagcatcgccgcgagccacaccacagtggactccatc
gagcagcgttttgtgcaggtttcccagcacaacaaactcgaggcgttggtgcgggtactg
gaagtggaaaacactgaaggtatcatcatcttcgtacgtacccgtaactcttgtatggaa
ctggctgaaaagctggaagcccgtggttacgccgcatcaccgctgcatggtgatatgaac
cagcaggcccgtgagcgtgcggttgatcagctcaaatccggcaagctggatattctgatc
gccaccgacgtggccgcccgtggtctggacgttgagcgtatcggccacgtagttaactac
gatattccttacgataccgaagcttacgtacaccgtattggtcgtaccggccgcgcgggt
cgtaccggtatggcaatcctgtttgtgaccagccgtgaaatgcgcatgctgcgcaccatc
gagcgcgccaccaacagccgcatctctccgatgaaggtcccaagccctgagtcagtggcc
gaacgtcgtctgtctcgcctgggtgagcaggttgccggcatcctcgccaacgagcacctg
gactttatgaagggcgccgttgcctctttgtgtcagcagctggaagtagataccgagcaa
ctggccgccgccctgctgcatcaggtgcagctggagcgtccactgcaactgaatcctatg
cacgagcgtcagcgtgataacttcgacgagcgcaccggccgtggccagaatgatcgcgcc
gagcgcggtgatcgcggtgatcgcagcgaccgtaacgagcgtcgccgtgactcacgtcct
ttgccgggcaacttcggcagtgccgataccctcaaggacaaccctgacatcagcatgaag
cgttatctcatcgatgtgggtcgcgaccataacgtgggtgtgggcaacatcgtcggcgcc
atcgccaacgaagccaacatcgacagccgctacatcggccagatccaactgtacgatgca
gtgaccacagttgacctgccagacggcatgccaaaagaagtgctgcagcacctgaaaaaa
gtgcgcgtatgtggcaaaccactgaacatccgcgaagtgagcaacgatggcagcgacgaa
atcccggtaagcaacgggcctgtccccaagcgtccacgcaagccatccggcgatcgccct
gagcgcggtgagcgcaagttcaacgatcgcggcggtgaccgtggcgaccgcggtggtgat
cgtaaattcggcgagcgcaagagcttcgacaaaaagccggccagcaagccacgtcgtcca
aaggaagactaa
DBGET
integrated database retrieval system
