Shewanella litorisediminis: JQC75_05660
Help
Entry
JQC75_05660 CDS
T07182
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
slit
Shewanella litorisediminis
Pathway
slit03030
DNA replication
slit03430
Mismatch repair
slit03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
slit00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JQC75_05660 (dnaE)
03430 Mismatch repair
JQC75_05660 (dnaE)
03440 Homologous recombination
JQC75_05660 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
slit03032
]
JQC75_05660 (dnaE)
03400 DNA repair and recombination proteins [BR:
slit03400
]
JQC75_05660 (dnaE)
Enzymes [BR:
slit01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
JQC75_05660 (dnaE)
DNA replication proteins [BR:
slit03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
JQC75_05660 (dnaE)
DNA repair and recombination proteins [BR:
slit03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
JQC75_05660 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
tRNA_anti_2
DUF655
Motif
Other DBs
NCBI-ProteinID:
QRH02896
LinkDB
All DBs
Position
1282055..1285528
Genome browser
AA seq
1157 aa
AA seq
DB search
MSQPRFVHLRVHSDFSMTDGLAKVKPILGKAEAEGMAAIALTDQNNLCGLVKFYSTCHDK
GIKPIIGADFWMLVPGFEDEFCAVTVLAMDNEGYQNLTQLISQAYLRGQVQGRVAIDQEW
LLTYNSGILLLSGAKEGDLGKALIKGNAAQAASLTEFYQTHFPDRYFIELIRTGRADEET
YLHMAVKHAAEVGLPVVATNQVVFLSPEDFEAHEIRVAIHDGFTLADNRRPKKYSEQQYL
RSEDEMCELFADIPEAIENTVEIAKRCNVTVRLGEYFLPNFPTGDLSTEDFLVERSKEGL
EERLEFLFPDPEVRAEKRKEYDERLDIELQVINQMGFPGYFLIVMEFIQWGKDNGIPVGP
GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVAE
LYGREAVSQIITFGTMAAKAVVRDVGRVLGHSYGFVDRISKMIPPEPGMTLAKAFEVEPG
LQEAYDADEEVKDLIDMARKLEGVTRNAGKHAGGVVIAPTKITDFSPLYCDAEGKNPVTQ
FDKNDVEYAGLVKFDFLGLRTLTIIDWALGMINPRLAKLGKPPVDIAAIPLDDSKSFGVL
KRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGHEE
ISYPDATWQHESLKPILEPTYGIILYQEQVMQIAQTLAGYTLGGADMLRRAMGKKKPEEM
AKQRAGFEAGSVKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHFPS
EFMAAVMSADMDNTDKIVTLVDECDRMGLKIIPPDVNKGLFKFTVDEDLNIVYGIGAIKG
VGEGPVETILEARKDGPFTDLFDFCARVDLKKLNRRVIEKLIYSGALDSLGPHRASMMAT
LPEAMQAADQHAKAQATGQHDMFGLLNDHQEDAKQQFVECTPWPDKIWLEGERETLGLYL
TGHPINQYLKELKNYTSGRLKDIHPTERGKTVKAAGLVVASRVMLTKRGSKMGLLTLDDK
SARLEVMLFTEAFEKFGHLLEKDRILICEGEVSFDDFSGGNRMTVRNIIDISEARSHFAK
ALEVDLASQQATEPMLDKFFEVLTPWKGGAVPLIVNFSRADASGRLQLSDEWRVNPSDDL
VLALQTLIGPDKIRIQF
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaaccccgttttgttcatctgcgcgttcactcagatttttccatgaccgatggt
ctggcaaaggttaagcccattcttggcaaggccgaggccgaaggcatggcggcaatcgcg
ctgacggatcagaataacctctgtggtctggtgaagttttacagtacctgccacgacaaa
ggcattaagcccattattggtgccgacttctggatgctggtgcccgggtttgaagacgag
ttttgtgccgtcactgtgcttgcaatggacaacgagggttaccaaaacctgactcagctt
atcagtcaggcgtatttgcggggccaggtgcagggcagggtggcaatcgatcaggaatgg
ctgctgacttacaacagtggcattttgctgctctccggcgccaaagaaggggacctgggt
aaggcgctgatcaagggcaatgccgcgcaggcggcgagtctgacggagttttaccagacc
catttccccgaccgttattttatcgagcttatccgcaccggccgagccgacgaagaaacc
tatctgcatatggcggtgaagcacgccgcagaagttgggctgcccgtggtagccaccaat
caggtggtgtttttgagtccggaagactttgaggcccacgagatccgggtggccattcac
gatggttttaccctggctgacaatcgccgccccaaaaaatacagtgagcagcagtatctt
cgcagtgaagacgaaatgtgcgagctgtttgccgatattcccgaggccattgagaacacg
gtggagatagccaagcgctgtaacgtgactgtgcgtcttggtgaatacttcctgcccaac
ttccccaccggcgatttaagtaccgaagactttttggtggagcgctccaaagagggcctt
gaagagcggttggagtttctgttccccgaccctgaggtcagagccgagaagcgcaaggag
tacgatgagcgcctcgatatcgagcttcaggtaatcaaccagatgggatttcccggttac
tttcttatcgtgatggagtttatccagtggggtaaggataacggcattccggtggggccg
ggccggggctcgggtgccggctctttggtggcctatgccctgaaaattaccgaccttgat
ccgctggaattcgacctgctgttcgagcgttttttgaatccggagcgggtttccatgccc
gacttcgacgttgacttctgcatggacagacgcgacgaggtgattgaccacgtggccgag
ctttacggccgcgaggcggtgtcgcagatcattactttcggtaccatggccgccaaggcg
gtggtgcgtgacgtaggccgggtgctggggcactcctacggctttgttgaccgtatctcc
aagatgatcccgcccgagccgggcatgaccctggccaaggcctttgaggtggaacccggt
cttcaggaggcctacgacgccgatgaggaagtgaaagaccttatcgacatggcgcgtaag
cttgaaggtgtcacccgaaatgcaggtaaacacgccggtggcgtggtaattgcgcccact
aaaatcaccgacttctcgccgctttattgcgacgccgagggcaaaaacccggtaacccag
ttcgataagaacgatgtggaatacgccggactggtgaagtttgactttttgggtctcaga
accctcaccattatcgattgggcgctggggatgattaaccccagactggccaaacttggc
aagccgccggtggatattgccgccattccgctcgatgacagcaagtcatttggcgtgctc
aaacgctatgagaccacagccgtattccagctcgaatcccgcggcatgaaagaccttatc
aagcgtctgcaacccgactgtttcgaagacatgattgcactggtggccctgttccgtccg
ggcccattgcagtcgggcatggtagataactttatcgaccgtaagcacggccacgaagag
atttcttacccggatgccacctggcagcacgagagcctcaaacccatcctcgaacccaca
tacggcatcatcctttatcaggaacaggtgatgcagattgcccaaacgctggccggctac
accctgggtggtgctgacatgctgcgccgggccatgggtaagaaaaagccagaagaaatg
gccaagcagcgggcaggctttgaagccggctcggtgaaaaatggcgtggatggcgagctt
gccatgaagatcttcgacctggtggagaaattcgcagggtacggcttcaacaaatcgcac
tcggccgcctacgccctggtgtcttatcagacgttgtggctcaagacccacttcccgtcg
gagtttatggcggcggtaatgtcggcggatatggacaacaccgacaagattgtgaccctg
gtggatgaatgcgatcgcatggggcttaaaatcattccgccggatgtgaacaagggccta
ttcaagtttaccgtggatgaagaccttaatatcgtctacggcatcggcgccatcaagggc
gtgggtgaggggccggttgagaccattctcgaggccagaaaagatgggcccttcaccgac
ctgttcgacttttgtgcccgtgtcgatttgaaaaagctcaatcgccgggtgattgaaaaa
ctgatttactcaggtgcgctggatagcctggggccacaccgtgcctccatgatggcaacc
ctgccagaggccatgcaggcggcggatcaacacgccaaggcccaggccaccggccagcac
gatatgtttggtctcctgaacgaccatcaggaagacgccaagcagcaatttgtggaatgc
accccctggccggacaaaatctggctcgaaggtgagcgggaaaccttggggctgtatctc
accggtcaccccatcaatcagtatctgaaagagctgaaaaactacacctcgggcaggctg
aaagatattcaccccaccgagcggggtaaaaccgtcaaggccgccggtttggtggtggca
agccgggtgatgctcaccaaacggggctccaaaatggggcttctgaccctggatgacaag
agcgcccgccttgaggtgatgctctttactgaagcctttgaaaaatttggtcatctgctc
gaaaaagaccgcattcttatctgcgaaggggaagtgagcttcgatgatttctccggcggc
aaccgcatgaccgtccgcaatattatcgatatcagcgaggcccgcagccattttgccaag
gcgcttgaggtcgatttggcgtcacagcaggccacagagccaatgctggacaagttcttt
gaagtgctcacgccctggaagggcggcgccgtgcccctgattgtgaacttcagccgcgcc
gatgccagcggccgcttgcaactcagtgatgagtggcgggttaacccgtccgatgacctg
gtgctggcactgcaaaccctgataggcccggataaaattcggatccagttctag
DBGET
integrated database retrieval system
