Shewanella litorisediminis: JQC75_06055
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Entry
JQC75_06055 CDS
T07182
Symbol
ung
Name
(GenBank) uracil-DNA glycosylase
KO
K03648
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
slit
Shewanella litorisediminis
Pathway
slit03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
slit00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
JQC75_06055 (ung)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
slit03400
]
JQC75_06055 (ung)
Enzymes [BR:
slit01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
JQC75_06055 (ung)
DNA repair and recombination proteins [BR:
slit03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
JQC75_06055 (ung)
Prokaryotic type
JQC75_06055 (ung)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
Tox-HDC
Motif
Other DBs
NCBI-ProteinID:
QRH02965
LinkDB
All DBs
Position
complement(1391780..1392436)
Genome browser
AA seq
218 aa
AA seq
DB search
MDWQQLLGDEKRAPYFQDTLKYVDERIRAGVTVYPPKAEVFNAFRFTPLEQVKVVILGQD
PYHSPNQAHGLCFSVKSPCPPPPSLQNIFRELASSIPGFITPSHGDLSHWAYQGVLLLNT
VLTVERGQAHSHAHLGWEQFTDAVIRGISTHCQGVIFLLWGSHAGKKSGLIDSNRHRVLR
APHPSPLSAHRGFFGCNHFAQTNDVLQRQGKTAIDWRL
NT seq
657 nt
NT seq
+upstream
nt +downstream
nt
gtggactggcagcaacttcttggtgatgaaaaaagggcgccctactttcaggacaccctc
aagtacgtcgatgagcgtatacgcgcgggcgttaccgtgtatcctcccaaggccgaagtc
tttaatgcctttcgctttacgcccctggaacaggtcaaggtggtcatattggggcaagac
ccttatcacagccccaatcaggcgcacggcctgtgtttctcagtaaaatcgccctgtcct
ccgccaccctcactacagaacatctttagggagctggcaagctccatccccggttttatc
acgccttcccacggagacttaagccattgggcatatcagggagtactgctgctcaacacc
gtattgacggtggagcggggtcaggcacattcccacgcccatctcggctgggagcaattt
accgatgcggtgatccgcggcatcagcacacattgccagggtgtcatatttttactctgg
ggtagccatgcgggtaaaaaatcaggcctgattgacagcaacaggcacagggtgctgcga
gcgcctcatccgtcaccactctcggcgcacagaggttttttcggttgtaatcactttgcc
cagaccaatgacgtgttgcaacgtcaggggaaaaccgcgatagactggcgcctgtga
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