Shewanella litorisediminis: JQC75_06555
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Entry
JQC75_06555 CDS
T07182
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
slit
Shewanella litorisediminis
Pathway
slit03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
slit00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JQC75_06555 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
slit03400
]
JQC75_06555 (mfd)
Enzymes [BR:
slit01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JQC75_06555 (mfd)
DNA repair and recombination proteins [BR:
slit03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
JQC75_06555 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
ERCC3_RAD25_C
Glyco_tran_WecG
AAA_30
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QRH03063
LinkDB
All DBs
Position
complement(1495280..1498747)
Genome browser
AA seq
1155 aa
AA seq
DB search
MSSFTVDRLPKTPAKGRVSAVRLPGGVARALTLAEMTCSYAGTTLIVTSDTPTALVLEAE
LGYLLKPRGIDICLFPDRETLPYDSFSPHQDLISQRLETLSNLERGQGRLVIVPLTTLMV
RLPPKAFLAANVLILKKGDRYQLQQMRQHLTDTGYHLVEQVYEHGEFAIRGSILDIFPSG
AREPLRIELFDDEVESIRHFDPETQRSSGEVDSIRMLPAREFPTDSQAIEGFRQRYRRTF
ETVTNAAESVYQLVSRNLMPAGIENYLPLFFDDTATLFDYLPDELQIITTGALHQAAEHH
LSEIHSRYEDRRVDPLRPLLPPKTLYQTTEELFARFKQYPRIDLSGDEGDKSLDAAPLPD
IRANHKLKQPLESLAHWAQAGQRIAFVAESEGRREALLDLLGKASLKPKLFSHLDEFLAS
DSHHGLIVAPLSMGCQLKIGKSQVAVVCETELFGERVSQERRRDKQRQLSQDVLIKNLAE
LKVGQPVVHLEHGVGLYQGLETLDTGGLVAEYLKLEYAGGDKLYVPVSALHLISRFAVGN
DDSAPLNRLGNESWSKAKRKAIEKIRDVAAELLDVYARREARPGEPCTLDEAEYAQFAQG
FPFEETVDQETAIKAVIDDMCQPKAMDRLVCGDVGFGKTEVAMRAAFLAVSSGKQVVVLV
PTTLLAQQHFENFKDRFADWPVRIEVMSRFRTAKEQQAVLSAMGEGKVDIVIGTHKLLNT
ELNFESLGLLIIDEEHRFGVRQKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSII
ATPPAKRLAVKTFVREYDKATVREAILREILRGGQVYYLHNQVETIEKAAQDIRELLPEA
RVVTAHGQMRERELERVMSDFYHQRFNVLVCTTIIETGIDVPSANTILIDRADHFGLAQL
HQLRGRVGRSHHQAYAYLMTPHPKLMTVDARKRLEAIDALEDLGAGFMLATQDLEIRGAG
ELLGDEQSGHISKIGFSLYMEMLEGAVKALKQGKEPSLRQMLGAQCEIDLRIPALLPDDY
VSDVNMRLSLYKRIAGCDTEKAVDEMKVELIDRFGLLPDATRNLLTMTVQKHRATRLGAS
KIEMHARGGSIEFGEEHRVDPGFIIGLLSSQPQVYRMDGPNKLRFTLPCETAKERLDLLE
LLLEQLEQHSVGEGK
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
atgagctcatttacggtagaccgtcttcccaagactccggccaaaggccgggtgtctgct
gtcaggctgcctggcggcgttgcccgcgccctgacactggccgaaatgacctgcagttac
gcgggtaccaccctgatagtcaccagcgatacccccacagccctggtgctggaggcagag
ctaggttacttgcttaagccccgtggtatcgacatttgcctgtttcccgacagggaaaca
ctgccctacgacagcttttcgccccaccaggacctgatttcccagcggctcgaaaccctc
tccaatctggagcggggccaggggcgtttagtgatagtgcccctgacaactctgatggtg
cgtttgcctcccaaagcgtttttggcggccaatgtacttattcttaaaaaaggtgaccgt
tatcagctgcagcagatgcgtcagcatctgacagacaccggctatcacctggttgagcag
gtttatgagcacggtgagtttgccatccgtggctcgattctcgatattttccccagcggc
gcccgggagccactgcgaattgagctcttcgacgatgaagtggagtcgattcgccatttc
gaccctgagactcagcgctccagcggcgaagttgacagtatccgcatgctgccggcaagg
gagtttcccaccgacagccaggccatcgaagggtttcgccagcgataccgccgcaccttt
gagacagtgaccaacgcggccgagtctgtataccagttggtcagccgcaatctgatgccc
gcgggcattgaaaactacctgccgctgttttttgatgacaccgcgaccctgttcgattat
ctgccggacgagctgcaaatcatcaccacaggcgccctgcatcaggcggcggaacatcac
ctgagtgaaatccacagccgctatgaagaccggcgggttgacccgctgcggcccttgttg
ccgcccaagacgctgtaccagacaacggaagagctgtttgcccgcttcaaacagtatccg
agaattgatttgtccggcgacgaaggcgataaatccctggatgccgcccccctgcccgac
atccgggccaatcacaaactcaagcagccgcttgaatcccttgcgcattgggcgcaggcg
ggccagcgcatcgcctttgttgccgaatcggaaggccgccgggaagcactgctggatctc
ctgggcaaagccagcctgaagccaaagcttttcagccatctggatgagtttctcgcatca
gacagccaccacggcctgatagtggcaccgctgtccatgggctgtcagctgaaaatcggt
aaatcccaggtagccgtggtctgcgaaaccgagcttttcggtgagcgggtttcacaggag
agacgccgggacaaacagcgccagctcagtcaggatgtgctcatcaaaaacctggccgag
ctcaaggttggccagccggtggtacaccttgaacacggtgtgggcctgtatcagggattg
gaaaccctcgacacgggaggcctggtagccgagtacctcaaactcgagtatgccggcggc
gacaagctttatgtgcctgtatcggcactgcaccttatcagccgttttgcggtgggcaac
gatgacagtgcgccgctcaatcgcctcggtaacgaaagctggagcaaggccaagcgcaag
gccatcgaaaaaatccgcgatgtggcggcagagcttttggacgtttatgcccgccgcgag
gcccgtcccggggagccctgcaccctggatgaagccgaatacgcgcagtttgcccagggc
ttcccctttgaggaaaccgtggatcaggaaactgccatcaaggcggttatcgacgatatg
tgccagcccaaggccatggaccgactggtgtgtggtgatgtgggctttggtaaaaccgaa
gtggccatgcgtgcggccttccttgcggtatccagcggaaagcaggtggtggtattggtt
cccacgacactgttggcgcagcagcattttgaaaactttaaagaccgcttcgccgattgg
ccagtgcgcattgaagtgatgtcgcgcttcagaactgccaaagagcagcaggcggtactg
tcggccatgggtgaaggcaaggtcgatatcgtaattggcacgcacaagcttttgaatacc
gagctgaactttgaatctctcggtctgcttatcatcgacgaagagcacaggtttggggtc
cgccagaaagaacgtatcaaggccatgcgcgccaatgtggatattctgaccctgaccgcc
acacccattccccgtaccctgaacatggccatgtcaggcatgcgtgacctgtctattatc
gccaccccaccggccaagcgtctggcggtgaaaacctttgtgagggaatacgacaaggcc
acggtgcgcgaggcgatactgcgggaaattctgcgcggtggtcaggtgtattatctgcac
aatcaggtcgaaaccatcgaaaaggctgctcaggatattcgagaactgctgcccgaggcg
cgggtcgtcaccgcccacggacagatgcgcgagcgcgagctggaacgggtgatgtcggac
ttttaccaccagcgctttaacgtgctggtgtgtaccaccatcatagaaacgggcatcgac
gtccccagtgccaataccatcttgatagacagggccgaccactttggcctggcgcagctg
caccagttgcggggccgtgttgggcgctcccatcaccaggcctatgcctatttgatgacg
ccccatcccaaactgatgacggtggatgcccgcaaacggctcgaggccattgatgcgttg
gaagatttgggcgcaggttttatgctcgccacccaggatctggaaatccgcggcgccgga
gaactcctgggtgatgaacaaagcggccacatttccaagataggtttcagtctctatatg
gaaatgctggaaggggcggtaaaggcactcaagcagggcaaagagccgtcgctgaggcaa
atgctgggcgctcagtgtgaaatcgacttgcggatcccggcccttctgcccgacgattac
gtaagcgatgtgaatatgcgactgtcgctctataagcggatagcgggctgcgacactgaa
aaagccgtggacgaaatgaaggttgaacttatcgaccgcttcggattattgcctgacgcc
acgcgcaacctgttaaccatgacagtacaaaagcacagggccacccgactgggcgccagt
aaaattgagatgcacgcccgcggcggcagtatcgagtttggtgaagagcacagggtcgac
cccggctttatcatcggcttgctttcgtcacagccccaagtctatcgtatggacggcccc
aataaactcaggttcaccctgccttgcgaaaccgccaaggaacggttggacctactggaa
ctgctgctggagcagctcgaacaacacagcgttggagaaggaaaataa
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