Shewanella litorisediminis: JQC75_09645
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Entry
JQC75_09645 CDS
T07182
Name
(GenBank) LysM peptidoglycan-binding domain-containing protein
KO
K08307
peptidoglycan lytic transglycosylase D [EC:
4.2.2.29
]
Organism
slit
Shewanella litorisediminis
Brite
KEGG Orthology (KO) [BR:
slit00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
slit01011
]
JQC75_09645
Enzymes [BR:
slit01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.29 peptidoglycan lytic transglycosylase
JQC75_09645
Peptidoglycan biosynthesis and degradation proteins [BR:
slit01011
]
Peptidoglycan biosynthesis and degradation
Lytic transglycosylase
JQC75_09645
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LysM
SLT
LysM3_LYK4_5
LysM_RLK
LysM1_NFP_LYK
LysM2_CERK1_LYK3_4_5
HTH_28
LPAM_1
Motif
Other DBs
NCBI-ProteinID:
QRH00176
UniProt:
A0ABX7FYQ5
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All DBs
Position
2222722..2224209
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AA seq
495 aa
AA seq
DB search
MRNINYFFAGSLLLLSGCQLISNGDAPTDDETNIHSISEIVAKPDPTPQEQVVEVRDLWQ
RLQEGMLWDAPNEAYVAPFRQKLLANPRHLEQVFSRAEPFLYLIVDELDRRGLPLELALL
PAIESAFDADAISHASASGLWQLTPPMARYFGLKMNWWYDGRNDVVASTKAAADFLEYLY
DRTGNNWHYAIAAYNSGEGRVLSAVRHNEKVGKPTDIWALKLPRETRNYVPNLLALADVV
KHADKYGVALPTIKNEPVIDVVEIGSQIELALAADLAGLSISELKALNPGFKQWATAPKG
PHRLVVPVSMAPDFVVALAQTPQDQRVQWARYQIKRGDSLSVIARQFGTTPQVLKQVNQM
KNNQLIAGKELVVPANGRTSSAVQVASVTPKQRYKVKPGDSLWKIAQAHGVSVDDLQKWN
ALGQKAVIRNGQVLTVWPGSKAVANTRSTTYKVKRGDSLSLIAQKFKVKISELMSWNQLS
SSALQPGQTLTVMLQ
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
atgcgaaacattaattacttttttgccggcagcttactgctgctttccggctgtcagctg
atctccaatggggacgcaccaaccgacgacgagactaacatccattcgatctccgaaatc
gtcgccaaacccgatcccacgcctcaggagcaggtcgttgaagtgcgggatctgtggcaa
cgtttacaggaaggtatgctctgggatgccccaaatgaagcctacgtcgcgcctttccga
cagaagctgctggcgaatccacggcaccttgagcaggtgttcagtcgagccgagccattc
ctgtacctgatagtcgatgaactcgaccgacgcggattgccgctggaactggcactgttg
cccgccatcgaaagtgcctttgatgctgacgccatatcccacgccagtgcgtctggctta
tggcagttaactccacccatggcccgatatttcgggctcaagatgaactggtggtatgac
ggccgcaacgatgtggtagcttccactaaagcggcagccgattttctggagtacctgtac
gatcgcaccggcaacaactggcactatgccattgcagcctataacagcggcgaaggccgg
gtattgagtgcggtacggcataatgaaaaagtgggcaagcccactgacatctgggcatta
aagctgcctcgggaaacccgtaattatgttcccaatctgctggcgcttgccgatgtggta
aagcacgccgataaatatggcgtagccctacctactatcaaaaacgaacctgttatcgac
gtggtagaaataggcagccagattgaacttgccttggccgctgatctggcaggattgagt
atcagtgaacttaaggcattgaaccccggattcaagcaatgggccacggctcccaaaggt
ccccaccgcttggttgtgcctgtttccatggcgccggattttgtcgtggcactggcgcaa
accccacaggatcagcgagtgcaatgggccagataccagatcaagcgcggcgatagcctg
agcgtgattgcccgccagttcggtacaacacctcaggtgctaaagcaggtgaatcagatg
aagaacaatcagctgattgccggcaaggaactggtggtccccgccaatggtcgcacaagc
tctgcagtgcaagtggcatcggtaaccccaaaacaacgctataaagtgaaacccggcgac
agtctgtggaaaatcgcccaggcccacggtgtcagcgtggatgatttgcaaaaatggaat
gctctgggtcaaaaagccgttatccgcaatgggcaggtgctcactgtatggccgggctcc
aaagcggtcgcgaacacgcgttcgaccacatataaagtaaaacgcggcgactctctgtcg
ttgattgcccaaaagtttaaggtaaaaatctccgagttgatgagctggaatcaactctcg
agcagtgccctgcagcccggacagaccctgactgtgatgctgcagtaa
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