Shewanella litorisediminis: JQC75_09890
Help
Entry
JQC75_09890 CDS
T07182
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
slit
Shewanella litorisediminis
Brite
KEGG Orthology (KO) [BR:
slit00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
slit03016
]
JQC75_09890 (rnd)
Enzymes [BR:
slit01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
JQC75_09890 (rnd)
Transfer RNA biogenesis [BR:
slit03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
JQC75_09890 (rnd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
ASA5
Motif
Other DBs
NCBI-ProteinID:
QRH00222
LinkDB
All DBs
Position
complement(2282173..2283288)
Genome browser
AA seq
371 aa
AA seq
DB search
MLEFHYVKDDEALTALVGQYSQSRLLVLDTEFVRTRTYYAKLGLIQVYDGNTLALIDPLD
IQDLSGFWALLSNPNILKLVHSCSEDLEVFARYGRVQPTPLFDTQIAAALCGMGHGLGYA
KLVEECLGQTLDKGESRTDWIKRPLTDAQLQYAANDVFYLYQLYPQLEQKLKALGRFDWV
LEEGARLTEGRLQQPEAATAYLKVKNAFQLTPKQLAYLEVLAAWRLERALDRDLALGFVI
KDHALIALAKKPPRSLSDLLKINDLSEHEKRIHGKEILKVLQKADVDNPPDAIDVIALKP
AYKQAFKSIKAALTDICEREGLPSELFCSKRHIHEYLEYRWQSDSEDTPLLLQGWRGQLA
AEVLQTLVLEP
NT seq
1116 nt
NT seq
+upstream
nt +downstream
nt
ttgctggagtttcactacgtaaaggacgatgaggcgctgacagctctggtcggccaatac
agccaaagccgtttactggtacttgacaccgaatttgtgcggacccgtacctattacgcc
aaactgggcctcattcaggtatatgatggaaatactctggcactgatagacccattggat
atccaggatttatctggcttttgggcgctgttgtccaacccaaatatcctgaagctggtg
cattcctgctcggaagatcttgaagtgtttgcccgctatggccgggtacaacccaccccc
ttgtttgatacccaaattgccgcggcgctctgcggtatgggccatggacttggctatgcc
aagctggtggaagaatgtttgggacaaaccctggacaaaggtgaatcccgcaccgattgg
attaaacggccactgacggatgcccagctgcagtacgccgccaatgatgtcttctacctg
tatcagttgtatccccagcttgaacaaaagctcaaagcgctcgggcgcttcgattgggtg
ctggaagaaggtgcccgtttgacagaagggcgtttacagcagccggaagcagcaacggcg
tacctcaaggtaaagaatgcgtttcaactgaccccaaagcaattggcgtaccttgaagtt
ctggctgcctggcgcttggagcgcgcgcttgaccgtgacctggcgcttggctttgtgatt
aaagatcatgccttgattgccctcgcgaaaaagccaccccgttccttaagtgatttgtta
aaaatcaacgatctctccgagcatgaaaaacgcattcacggcaaagagatcttgaaggta
ttgcaaaaagccgatgtggataatccaccagatgccatcgatgtgattgcacttaaaccc
gcttacaaacaggcgttcaaaagcataaaagctgcgcttactgatatttgtgaaagggaa
gggctgccgagcgagcttttttgttctaaacgccacatccacgagtatctggaatatcgc
tggcaaagtgattctgaggatacgccattgctgctgcaaggctggcgtggacaactcgct
gcagaggtgctgcaaactctggtgctggagccctga
DBGET
integrated database retrieval system
