Shewanella litorisediminis: JQC75_10090
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Entry
JQC75_10090 CDS
T07182
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
slit
Shewanella litorisediminis
Pathway
slit03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
slit00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
JQC75_10090 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
slit03400
]
JQC75_10090 (sbcB)
Enzymes [BR:
slit01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
JQC75_10090 (sbcB)
DNA repair and recombination proteins [BR:
slit03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
JQC75_10090 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
JQC75_10090 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
JQC75_10090 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
QRH00261
LinkDB
All DBs
Position
2323591..2325003
Genome browser
AA seq
470 aa
AA seq
DB search
MENYIQPTIFWHDYETFGASPAKDRPAQFAGIRTDLDLNIIEEPVTFYCRLSPDYLPSPE
AILITGITPQLANRQGIPETEFMGRIQAIFSRPNTCVAGYNSLRFDDEVSRYGFYRNFID
PYAREWQQGNSRWDIIDLVRACYALRPEGINWPEKEDGSPSFKLEHLTAANGLGHDKAHD
AMSDVYATIALARLIKEKQPKLYDYYFRLRRKQAVAEQIDVLAMQPLVHISSKIPATQGC
ATLIAPVAHHMRNKNAVICVNLAMDIQPLIDLDVDALRARLYTKREDLASDELPVPVKQI
HLNKCPFIATAKTLEDANAERLGIDKAFAREQYKRLKQHPEIREKLTALFEDEPQQQSAD
PDYMLYSGGFFSPADRAKMDIIRATAPEHLAALELQFDDSRLPEMLFRYRARNYPLTLSY
DENLRWREFCQGRLNDPDYVIRLENLLEETAKDEKKQKLLGALCQYLQSL
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atggaaaactatattcagcccactattttttggcacgattatgaaacgttcggagccagc
ccggccaaggacaggccagcacaatttgccggtatcagaaccgatctggacctgaatatt
atcgaagagcctgtcaccttttactgccgtttaagccccgattacttgccctcacccgag
gccattcttatcaccggcattacaccgcaactggcaaatcgacagggtatacccgaaacc
gaatttatgggccgtattcaggccattttcagtcgccccaatacctgtgttgcaggctac
aattcgctgcgcttcgatgatgaggtcagtcgctacggtttctatcgcaactttattgac
ccctatgcccgtgagtggcaacagggcaattcccgctgggatatcatcgacttggtgcgc
gcctgttatgcactgcgcccagaagggatcaactggcccgaaaaagaagacggcagcccc
agctttaaactcgagcatctgactgcagccaatggcctggggcacgacaaggcccacgac
gccatgtccgatgtctatgccactatcgcactggcgcggcttatcaaggaaaagcagccc
aagctttatgactactatttccgtttaaggcgcaaacaagccgtcgccgagcaaattgac
gtgctcgccatgcagcccctggtacacatcagttcaaagattccggcaacccaaggctgt
gccaccctgatagctccggtcgcgcatcatatgcgcaataaaaatgcggtcatttgcgtg
aatctcgccatggacattcagccacttatcgatttggatgtggatgcgctgcgtgcaagg
ctttataccaaacgggaagatctagccagtgatgagctgccggtgccggttaagcaaatt
catttgaacaagtgcccctttatcgccacagccaaaaccctggaagatgccaatgccgag
cgcctgggtatagacaaagcatttgcccgggaacaatacaagcgattgaaacagcatccg
gaaattcgcgaaaagctcactgcactgtttgaggatgaaccacaacagcaaagtgcggat
cccgattatatgctttacagtggcggattcttcagccctgctgaccgcgccaagatggat
attatccgcgccacggccccggagcatttggcggctcttgagctgcaattcgatgattct
cgcctgccggaaatgctgtttcgttatcgggcgcgcaactacccgctcaccttgtcctat
gatgaaaacctgcggtggcgcgagttttgccaaggtcgcctcaacgaccctgactatgtt
atccggctggaaaacctgttggaagaaaccgccaaggatgaaaaaaagcaaaaactactt
ggggctttatgccaatatctgcagtcactttaa
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