Shewanella litorisediminis: JQC75_10175
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Entry
JQC75_10175 CDS
T07182
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
slit
Shewanella litorisediminis
Pathway
slit03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slit00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JQC75_10175 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slit03019
]
JQC75_10175 (rne)
03009 Ribosome biogenesis [BR:
slit03009
]
JQC75_10175 (rne)
Enzymes [BR:
slit01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
JQC75_10175 (rne)
Messenger RNA biogenesis [BR:
slit03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
JQC75_10175 (rne)
Ribosome biogenesis [BR:
slit03009
]
Prokaryotic type
rRNA processing factors
JQC75_10175 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QRH00278
LinkDB
All DBs
Position
2340295..2343663
Genome browser
AA seq
1122 aa
AA seq
DB search
MKRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDY
GAERHGFLPLKEIAREYFPKGYSFQGRPNIKEVVSEGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERTELKEAMADLEVPNGMGLIVRTAGVGKDAAEL
QWDLKVLLRHWDAIREASESGPGPMLIHQESNVIVRAIRDYLRRDVGEILIDHPKIYEQA
KQHIALVRPDFVERVKQYKAEVPLFTHYQIESQIESAFQREVRLPSGGSIVIDPTEAMTS
IDINSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVEN
RLRDAVHQDRARVQLGRISRFGLMEMSRQRLRPSLEESAAHICPRCHGQGTIRGTESLAL
SILRLMEEEAIKDNTSQVEAIVPVDVAAFLLNEKRKAIRIIEQRHEVEVYVIPDPHMMTP
EYKVIRHRQDDEIEEASYKRVEKPEAKLYEPRKLERAQAPEPVLKGFSAPLESAPAAAPK
VEVKPVKAASEAKPGFFSRLFAAIGSLFGGESTETEEKKAPARNGRQPNSRGRNRRNDNR
RDDGRQEGRSADSRREDSRREDSRREDSDKRRSDNKDRRGRNKPEQSDDKLLNDKSDKPR
EERPKRERTPKREKPEAVETADDAVEPKQEAVRERRQRRNMRRKVRLDDGAAQENLDSVN
TLESAEDTAGDAPQVAAKEKSDDKQTRSRRQPRKPKVEEKAAETELEATDVAQSSEAVAA
TDADTAVAPVAEVSTAQESTDLDVQAADEAQDETENDDKPRRDGRDGQRRSRRSPRHLRA
AGQRRRRDEQEQQNGEDTAEDVQTELALNDTAAPAGVVTQESVLEQAAETADVVVVNEAP
KAVAAEVAKLDTVQTEVISDEVASQSSEQVSAQVEAADKSPANEAVSEVQQPSVDVEVKA
QAPAAETAETKASDETQAAPLAAEAPVADTQKVVAEAVVEAPVSETDSKAEPAASQEVPA
KAAEKVVAAAPMTKPEAVVPAKAKTVEKAPIEVAPAAVPAQAKRPTGSRFGSMVSSEMTK
PSIEAREQVATPKGREYEAATAESSTPKVQSANSAGSDMARP
NT seq
3369 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgtatgctaatcaacgcaactcaatctgaagagttgcgcgttgccctagttgat
gggcaacaactctatgatctggatattgaaagtccaggacacgaacagaaaaaagccaac
atttacaaaggtaaaattacccgcgtagaaccctctctcgaagccgcctttgttgattac
ggtgcagagcgtcatggcttcctgcctcttaaggaaattgcccgcgaatacttcccgaaa
ggttattccttccagggccgccccaacattaaagaggtggtgagcgaaggtcaggaagtg
attgttcagattgataaagaagaacgtggtaacaagggcgcagccctcaccacctttatc
agtctggccggttcttacctggtactgatgcccaacaaccctcgcgccggcggcatttcc
cgccgtattgaaggtgatgagcgtactgaactcaaagaggccatggccgatttggaagta
cccaacggtatgggccttattgtgcgtaccgccggtgtgggtaaagatgccgccgagctg
caatgggacctcaaagtcctgctgcgccactgggatgccatcagagaagcctccgagagc
ggccctggtccaatgcttatccatcaggaaagcaacgttatcgtgcgcgccattcgcgat
tacctgcgccgtgacgtaggtgaaatcctgattgaccatccaaaaatttatgagcaggcc
aagcagcatatcgccctggttcgccctgacttcgttgagcgcgtgaagcagtacaaggcc
gaagtgccactgttcacccactatcagattgagtcgcaaatcgaatctgctttccagcgc
gaagtgcgtctgccttcaggtggttccatcgttatcgaccccaccgaagccatgacctct
atcgatatcaactctgcccgtgcaacaaagggtggggatattgaagaaacggcactgaac
accaacctggaagcggccgatgaaatcgcacgccaactgcgtctgcgtgacctgggcggc
ttgattgttatcgacttcatcgatatgacgcctgtgcgccatcagcgtgaagtggaaaac
cgtcttcgtgatgccgtgcatcaggaccgcgcccgtgtgcaactgggccgtatcagccgt
tttggtttgatggaaatgtcccgtcagcgcctgcgcccttctctggaagagtctgctgca
cacatctgcccacgctgccatggtcagggcaccatccgcggcaccgagtcgctggcgctg
tccattctccgtttgatggaagaagaagccatcaaggacaatacctctcaggttgaagcc
atagtacctgtggatgtagccgccttcctgctcaacgaaaagcgtaaagccattcgtatc
atcgagcagcgccacgaggttgaagtgtacgtgatcccggatccgcacatgatgacccca
gagtacaaggtgattcgtcatcgtcaggatgatgaaatcgaagaagccagctataagcgc
gttgaaaagccggaagccaagctgtacgagccacgcaagcttgagcgcgctcaggcacca
gagcctgtgctcaaaggtttctctgccccattggagtcagcgcctgctgctgcgcccaag
gtagaagtcaaacctgtcaaggcagccagcgaagccaaacccggtttcttcagccgtctg
tttgcagccataggttcgctctttggcggtgaaagcaccgaaaccgaagagaagaaagcc
cctgcacgcaatggtcgtcagccaaacagccgcggtcgtaaccgtcgtaacgacaaccgt
cgtgatgatggccgccaggaaggacgcagtgccgacagtcgccgtgaagacagtcgccgt
gaagacagtcgccgtgaagacagtgacaagcgtcgcagcgataataaagaccgccgtggt
cgcaataagccagagcagagcgatgacaagctgctaaacgacaagagcgataaaccacgt
gaggaaagacctaagcgtgaacgtacgcccaagcgtgaaaagcctgaagcggttgaaacg
gccgatgacgcagtagaaccaaagcaggaagccgtacgcgaacgtcgccagcgtcgtaac
atgcgccgtaaagtgcgtttggatgacggtgccgcccaggagaatctggattcagttaac
acattggaatctgctgaagacactgccggtgacgccccccaggtggccgcgaaagagaag
tctgacgataagcaaacccgcagccgtcgtcagcctcgcaagccaaaagtggaagaaaaa
gcggctgaaactgaactggaagcaaccgacgttgcacaaagcagcgaagccgttgcagcc
actgatgctgataccgcagtcgcgcccgttgccgaggtgagcacagctcaagaaagcact
gacttggatgtccaggccgctgatgaggcccaggacgagactgaaaacgatgataagcca
cgccgtgatggccgtgatggacaacgtcgcagtcgccgcagccctcgtcacttgcgtgca
gccggccagcgccgccgccgcgatgaacaagagcagcaaaatggcgaggataccgcagag
gacgtccaaactgagcttgcattgaatgacactgcagcgcctgccggggtggtcactcag
gagtcagtgctggaacaggccgctgaaactgctgacgtggttgtcgttaacgaagcccct
aaagccgttgctgccgaagttgccaagcttgataccgttcagacagaagtgatatcggat
gaggtggcgagccaaagcagcgagcaggtttcagcccaggttgaagctgctgacaaatcg
cctgcaaacgaagctgtttctgaagtacagcaaccttctgtagacgttgaggtaaaagcg
caagcgcctgcagccgaaactgctgagaccaaagcgagcgatgaaactcaggctgctccc
ttagccgccgaagcaccggttgcagacactcaaaaggtggttgcagaggctgtggttgaa
gctcccgtatcggaaaccgatagcaaggccgaaccagccgcttcgcaggaagtgccagcc
aaagccgccgagaaagtagttgccgcagcgcccatgaccaagcctgaagcagttgtgcca
gccaaggccaaaaccgttgaaaaagccccaattgaggtggctccagcagcggtgccagca
caggccaagcgcccaactggcagccggttcggtagcatggtgagttcagaaatgaccaag
ccgagcatcgaggcccgtgaacaggttgctacgcccaaaggacgtgaatacgaagctgcc
actgccgaaagcagcacccccaaggtgcaaagcgctaacagcgccggctctgacatggcc
cgtccctaa
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