Shewanella litorisediminis: JQC75_11830
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Entry
JQC75_11830 CDS
T07182
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
KO
K10941
sigma-54 dependent transcriptional regulator, flagellar regulatory protein
Organism
slit
Shewanella litorisediminis
Pathway
slit02020
Two-component system
slit02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
slit00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
JQC75_11830
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
JQC75_11830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
slit03000
]
JQC75_11830
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
slit02035
]
JQC75_11830
Transcription factors [BR:
slit03000
]
Prokaryotic type
Helix-turn-helix
Other families
JQC75_11830
Bacterial motility proteins [BR:
slit02035
]
Flagellar system
Flagellar assembly proteins
Others
JQC75_11830
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
FleQ
Sigma54_activ_2
HTH_8
AAA_5
HTH_50
AAA_16
bpMoxR
AAA
AAA_7
Motif
Other DBs
NCBI-ProteinID:
QRH03669
LinkDB
All DBs
Position
complement(2690345..2691772)
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AA seq
475 aa
AA seq
DB search
MQTDQRILLVGNQTERIGRLSCILEFLGEQLETLDPSGLEQAVKETRFRALIVDLESLPL
EQVKVFATKMPWQPILLLGATDDLSANLIGSIEEPFNYPQLTELLHFCQVFGQQKRPDVP
TSGNQTKLFRSLVGRSEGIVNVRHLISQVAPSDATVLVLGQSGTGKEVVARNIHYLSERR
DGPFIPVNCGAIPPELLESELFGHEKGSFTGAISSRKGRFELAEGGTLFLDEIGDMPLAM
QVKLLRVLQERVFERVGGSKPIQANVRVVAATHRNLENMIENNEFREDLFYRLNVFPIEM
PSLSERCDDIPLLLQELVSRVFNEGRGKVRFTQRAIESLKEHDWSGNVRELSNLVERLTI
LYPGGLVDVNDLPVKYRHIDVPEYCVEVSEEMLERDALASIFNDDEPVEIPETRFPSELP
PEGVNLKDLLAELEIDMIRQALEQQDNVVARAAEMLGIRRTTLVEKMRKYGMSKD
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
atgcagacagaccagagaattttgcttgtaggaaaccagaccgaacgtatcggtcgtctt
tcctgcattcttgagtttttaggtgaacaactagagaccctggacccaagtggcctggaa
caagccgtcaaggaaacccgttttcgggcactgattgttgaccttgaatccctgccattg
gagcaggtaaaagtgtttgccaccaaaatgccctggcagccgattttactgctgggcgca
acagatgatctgagcgcaaatcttatcggtagcattgaagagccattcaactacccccaa
cttaccgaattgctgcacttctgtcaggtctttggccagcagaagcgcccggatgtaccc
accagcggcaaccagaccaagttattccgcagcctcgttggccgcagtgaaggcattgtc
aacgtgcgtcatctcatcagtcaggttgcgccatcggatgcgactgtattggtgcttggc
cagtccggtaccggtaaagaagtggttgcacgcaatatccattatctgtcagagcgtcga
gacggtccttttattcccgtcaactgtggggctattccaccggaattgcttgaaagtgaa
ctctttggccatgaaaaagggtcatttaccggagccatcagctcccgtaagggacgcttt
gaactggctgaaggcggtaccctgtttctggatgaaatcggtgatatgccccttgccatg
caggtaaaactgctgcgcgtgttgcaggagcgcgtatttgagcgcgtgggtggcagtaaa
cccattcaggccaatgtccgcgtggtggcagcaactcacagaaaccttgaaaacatgata
gaaaataatgagttccgtgaggatctcttctatcgtctcaacgtgttccccattgaaatg
ccgtcactgtcggagcgctgtgatgacattcctctgctgctgcaggagctggtcagtcgc
gtcttcaacgaaggccgcggcaaggtgcgtttcacccagcgcgccattgaatctctcaaa
gaacatgattggtcgggtaacgtccgcgaactctccaatctggttgaacgcctgactatc
ctgtatccgggtggtttggtggatgtgaacgatctgcccgttaagtatcgacacatcgac
gtacccgagtattgtgtcgaagtcagcgaagagatgttggagcgcgatgcgctggcatct
atcttcaacgatgatgagccggtggaaattccggaaacccgcttcccaagcgaattgcct
ccggaaggggtaaatcttaaagatttgctggccgagcttgaaatcgacatgatccgtcag
gcgttggagcagcaggataacgtcgttgcccgcgcagctgaaatgctggggatccgcaga
accactctggttgaaaaaatgcgtaagtatgggatgagtaaggactaa
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