Shewanella litorisediminis: JQC75_12485
Help
Entry
JQC75_12485 CDS
T07182
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
slit
Shewanella litorisediminis
Pathway
slit03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slit00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JQC75_12485
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slit03019
]
JQC75_12485
Enzymes [BR:
slit01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JQC75_12485
Messenger RNA biogenesis [BR:
slit03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JQC75_12485
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Cas3-like_C_2
adh_short
Helicase_C_2
Motif
Other DBs
NCBI-ProteinID:
QRH00695
UniProt:
A0ABX7G089
LinkDB
All DBs
Position
complement(2847642..2848865)
Genome browser
AA seq
407 aa
AA seq
DB search
MSFAAFNLPSPLPENLSQLGYTQPTEVQAGAIPMMMTGKDLMAKAATGTGKTAAFLLPIL
ARLISEEVPVRNLPAPRALVLVPTRELCQQVYDAAKALTKGSAVRIAQVYGGVALEIQLN
AIKGGVDLVVATPGRLLDHLKKRTLRIDTVSQLVFDEADRMLDMGFEDEIRALVKKLAKA
RQTALFSATLGDNVWQLAKSLMDSPTLLEIAAGKDDKPLIEEQVYQLDSERKFDFICHLL
GKNSWSQVLIFSRTKEGADKLAAKLVEAGHSAAALHADLSQRQREQNLADFKGAEARILV
ATDVAARGLDIQALPCIINVELPFKKEDYVHRIGRTGRAGSAGLAISLLDAADEPLLVAL
EHYLDRRLPQQWYPGFEPDLSIRHERPRSLSKAAQKQKARKRALAKR
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
gtgtcctttgccgcttttaacctgccttctccgttacctgaaaatctctcccagctcggc
tatacccagccaaccgaggtgcaggccggtgccatcccaatgatgatgaccgggaaagat
ctgatggcgaaagcggccacaggcacgggtaaaaccgccgcctttttgctgccgatactt
gcccggcttatctctgaggaagtgcccgttcgcaacctgcctgcgccaagagcactggtg
ctggtgcccaccagagagctttgccagcaggtttatgatgccgccaaagcgctgacaaaa
ggcagcgccgtgcgtattgcccaggtctatggcggtgtggctctggagattcagctgaat
gccatcaagggcggcgtggacttggtggtggcaacgcccgggcgtctgcttgaccacctg
aaaaaacgcaccctcagaatcgataccgtcagccagttggtatttgacgaggcagaccgc
atgctggatatgggctttgaggatgagatccgggcgttggtgaaaaagcttgccaaagcg
aggcaaaccgcgcttttttctgccaccctgggggacaatgtctggcagttggccaaaagc
ctgatggactcgccaacgctgctggaaatcgcagcgggcaaagatgacaaacccttgatt
gaagagcaggtttatcagctcgacagcgagcgcaagttcgattttatctgccacttgctg
ggtaaaaacagctggtcgcaggtgcttattttcagccgtaccaaagaaggggccgataag
cttgcggccaaactggtagaggccgggcacagcgcggctgccctgcacgccgacctgagc
cagcgccagcgggagcaaaatcttgctgactttaagggggctgaggcgcggattttggtg
gccaccgacgtggcggcgaggggcctggatatccaggcgctgccttgcatcatcaatgtc
gaactgccctttaaaaaggaagattacgtacatcgcatcgggcgtactggccgggccggc
agcgccgggcttgccatcagtttgctggatgccgccgacgagcctttgctggtggccctt
gagcactacctcgaccggcgtttaccgcagcagtggtatccgggttttgagcccgatttg
tccatccgccatgagcggccccgcagcctgagtaaagcggctcaaaagcaaaaagcccgc
aagcgggctttggcaaagcgctga
DBGET
integrated database retrieval system
