Shewanella litorisediminis: JQC75_12955
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Entry
JQC75_12955 CDS
T07182
Name
(GenBank) cryptochrome/photolyase family protein
KO
K06876
(6-4)DNA photolyase [EC:
4.1.99.13
]
Organism
slit
Shewanella litorisediminis
Brite
KEGG Orthology (KO) [BR:
slit00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
slit03400
]
JQC75_12955
Enzymes [BR:
slit01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.13 (6-4)DNA photolyase
JQC75_12955
DNA repair and recombination proteins [BR:
slit03400
]
Prokaryotic type
SSBR (single strand breaks repair)
Direct repair
JQC75_12955
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DPRP
Motif
Other DBs
NCBI-ProteinID:
QRH00782
LinkDB
All DBs
Position
complement(2958838..2960553)
Genome browser
AA seq
571 aa
AA seq
DB search
MLPQSPKGHFQYHTLRLILGDQLSSLHSWFSQRDDGVLYLIAELKQENSYVTHHIQKVCA
FFAAMADFAKCLKAAGHEVLHLTLDDTAEFADLPGLLTHVLQLTGASRFEYQRPDEYRLL
SQLGAFDVPGVQIALVDSEHFLLPFDEIDTHFPKGKHILMESFYRRMRKRFNILMDGAKP
MGGQWNFDASNRNKLKAGDMAGLPQPLLFANDISEIVSRLQRHGIVTIGHLEPGEKQTLK
NAGEASASGDLFAPLTQPDPELESDIDSASQTTKNTLLWPINREQSLALLDHFCRYCLPL
FGRFQDAMTAKHPSAWSLYHSRLSFSINSKLLHPAEVIDAAISTYEASCVHGASGAVDMA
QVEGFIRQILGWREYVRGVYWANMPDYAGLNALGAQNRLPGYFWHGNTRMNCMRHAIGQS
LDYAYAHHIQRLMITGNFCLLTDIAPKQVDDWYLGIYVDAIEWVEMPNTRGMALFADGGI
VGTKPYAASGAYINKMSDYCQSCHYDIKAKSGPGSCPFNSLYWRFMNKHAERLSANHRIG
MIFSSWYKMEEAQRDAILTTAEQYIADLECL
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atgttaccccaaagccccaaggggcattttcagtaccacactctgcgattgatccttggc
gatcagctaagcagcctgcattcctggttcagccagcgtgatgacggcgtgctctatctc
atcgccgagcttaagcaggaaaacagctacgtcacccaccatatccaaaaggtgtgcgcc
tttttcgcggccatggcagattttgcaaagtgtctcaaggccgctggtcatgaggtgctg
caccttaccctggacgacaccgccgagtttgccgatttgcccgggctgctcacccatgtg
ctgcaacttacaggtgcaagccgctttgagtatcagcgtccggatgaatatcggctgctt
tcacagcttggtgcctttgatgtgcccggggtgcagattgcactggtggatagcgagcac
tttttgctgccattcgatgagatagatacgcacttccccaaaggcaaacacattctgatg
gaaagcttttatcggcggatgcgaaagcgctttaacattctgatggatggcgccaaacca
atgggtggccagtggaattttgatgccagtaaccgcaataagttaaaagcgggtgatatg
gcaggcctgccgcagcccttgttgtttgctaatgatatcagtgagatagtctcgcgcctg
cagcgtcatggcattgttactatcggtcatcttgagcccggagagaagcaaaccctcaag
aacgcaggcgaggctagcgccagcggcgacctctttgccccattaactcaaccagatcct
gaacttgagtctgatattgacagtgcatcgcagaccacaaaaaacacacttctgtggccc
atcaatcgcgagcagagtctggcactgctcgaccatttttgccgttactgtctgccgctg
tttggccgcttccaggatgcgatgacggcaaagcacccatctgcctggagcctgtatcac
agccgcttatccttttcgataaacagcaaactgctgcacccggccgaggtgatagatgcc
gctatcagcacctacgaggccagttgcgttcatggagcaagcggcgctgtcgatatggcg
caggtagaaggctttatccggcaaattcttggttggcgggaatatgtgcgcggcgtgtat
tgggccaatatgccggattatgccggccttaacgcccttggcgctcaaaacaggttgccg
ggctatttctggcatggcaatacccgcatgaactgtatgcgccatgccattgggcaatcg
ctggattacgcctatgcccaccatattcaacggctgatgatcacaggtaatttttgtctg
ctcaccgacatcgcccccaaacaggtggacgactggtaccttggcatctatgtggatgcc
atcgaatgggtggagatgcccaacacccgcggcatggcactgtttgccgacggcggtatc
gtgggcaccaaaccctacgccgccagcggcgcctatatcaataagatgagtgactattgc
cagagctgccattacgacatcaaggccaaaagtggcccgggttcgtgccccttcaacagc
ctgtactggcgctttatgaataaacacgctgagcgcctcagtgcaaaccaccgtatcggg
atgattttcagcagctggtacaagatggaagaggcgcagcgcgacgcgattctcaccacc
gccgagcagtatattgcggatttggagtgtctttga
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