Shewanella litorisediminis: JQC75_13430
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Entry
JQC75_13430 CDS
T07182
Symbol
holA
Name
(GenBank) DNA polymerase III subunit delta
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
slit
Shewanella litorisediminis
Pathway
slit03030
DNA replication
slit03430
Mismatch repair
slit03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
slit00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JQC75_13430 (holA)
03430 Mismatch repair
JQC75_13430 (holA)
03440 Homologous recombination
JQC75_13430 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
slit03032
]
JQC75_13430 (holA)
03400 DNA repair and recombination proteins [BR:
slit03400
]
JQC75_13430 (holA)
Enzymes [BR:
slit01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
JQC75_13430 (holA)
DNA replication proteins [BR:
slit03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
JQC75_13430 (holA)
DNA repair and recombination proteins [BR:
slit03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
JQC75_13430 (holA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta
DNA_pol3_delt_C
DNA_pol3_delta_C
KaiA_N
Motif
Other DBs
NCBI-ProteinID:
QRH00866
LinkDB
All DBs
Position
3055879..3056907
Genome browser
AA seq
342 aa
AA seq
DB search
MRVYPEQLGRHLTPLAQCYCLFGDDAWLIENARSQLLEAARQQGFEERISLEQDSGFNWN
DLQNEWQALSLFASRRIIELTLPQAKPGADGSAMLTGLMAQPNPDLLLILRGPKLAAEQT
NSKWFKTLDNAGVYVPCNTPEGQQYFRWLDGRITANRLMLDSDARQLLATLYEGNLLAAE
QAVQLLALLAANRRVSAEELSQYFDDQSRFNVFQLSDALLGNQQQRVAHILAQLKAEGTA
LPIVLWAVFRELASLLQLKTAMVQRESLAPLWSKLRIWDKRKPLYEAALSRLSLPQIEAM
LALSSTLELKLKQGGEEDWTLLTHLCLLFDASAHSALVDTRG
NT seq
1029 nt
NT seq
+upstream
nt +downstream
nt
atgcgggtctatcctgagcagctgggccgccatctgacaccgctggcccaatgttactgt
ttattcggtgacgatgcctggttgatagaaaacgcccgctctcagttattggaagccgca
cggcagcaaggatttgaagagcgcatcagcctggagcaggatagcggcttcaactggaac
gacttacaaaacgagtggcaggcattgagcctcttcgccagtcgccgcattatcgaactc
accctgccccaggccaagcccggcgccgacggcagcgccatgctgacgggcctgatggcg
cagcccaacccggatctgctgcttatactgcgcggccccaaactcgccgccgaacaaacc
aacagcaagtggtttaaaaccctcgacaacgccggcgtttatgttccctgcaacacgcct
gagggacagcagtatttccgctggttagatggacgcattaccgccaaccgattgatgctg
gacagcgacgcccgccagttgctggcaaccctgtatgaagggaatctgctggctgccgag
caggcggtgcaattgctggcgctgctggcagcaaatcgacgtgtcagcgccgaagagctg
agccagtatttcgacgaccaatcccgctttaacgtgtttcagctaagcgatgccctgctt
ggaaaccagcagcagcgggtagcccatatactggcccagctcaaggctgaaggcacggcc
ttgcccattgtgctctgggcggtgtttcgcgaactcgccagcctgctgcaattgaaaact
gccatggtacagagagagtctttggcaccgctgtggtcaaagcttcggatttgggacaaa
cgcaagccgctctatgaagccgcgctgtcgcgattgtcgctgccacagattgaagccatg
ctcgccctctcatccacactggagctcaaactcaaacagggcggagaagaggactggacg
ctgctgactcatctttgcctgctgtttgatgccagtgcccacagtgctttggtggatacc
cggggttaa
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