Shewanella litorisediminis: JQC75_14180
Help
Entry
JQC75_14180 CDS
T07182
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
slit
Shewanella litorisediminis
Pathway
slit03410
Base excision repair
slit03430
Mismatch repair
slit03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
slit00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
JQC75_14180 (recJ)
03430 Mismatch repair
JQC75_14180 (recJ)
03440 Homologous recombination
JQC75_14180 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
slit03400
]
JQC75_14180 (recJ)
DNA repair and recombination proteins [BR:
slit03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
JQC75_14180 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
JQC75_14180 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
JQC75_14180 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
QRH01001
UniProt:
A0ABX7G119
LinkDB
All DBs
Position
complement(3220642..3222366)
Genome browser
AA seq
574 aa
AA seq
DB search
MKYKLTRRETVDDSHLPNHLHPLIKQLLARRGVAADDCEQELSRLLRPETMLGLDVAARL
LADAALASKRMLIVGDFDADGATSTSVCLLALKMLGIQGADFLIPNRFDYGYGLSVPLVA
LAVEKGAEVLITVDNGISSIDGVAAAKAAGMQVVITDHHLPGQVLPDADAIVNPNQHGCP
FASKSIAGVGVAFYLMLALRAELRNRGWFEKLGIKEPNLAVLVDIVALGTVADVVSLDAN
NRILVDAGLKRVRAGRCRPGITALLEVAKRNPARAVAADFGFAVGPRLNAAGRLDEMSLG
VETLLCDDIVYARRMAAELDGLNQERRELETGMQAEALKSLERLQLEESQLPWGIALYQD
DWHQGVIGILASRIKDRYHRPVIAFAEASDTEVKGSARSIKGLHMRDLLELISSRHPGLI
PKFGGHAMAAGLSLAKSDVGKFQTVFDETVRELLAPELLTGEILSDGELPIEYLTLEAAN
LIRASGPWGQGFEEPLFDGHFRLLQQRLVGEKHLKMLVETECGRLMLDAIAFNVDLKAWP
DASVRHVQLAYRLDVNEFRGNQSLQLLVEQIEAK
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
gtgaagtacaagctcaccaggcgcgaaacggtggatgactcccacctgccaaaccatcta
caccctctgataaagcaattgcttgcccgccgcggtgttgccgccgatgactgtgagcag
gaactgtcgcgcttgctgcgccctgagaccatgctgggcctcgatgttgctgcgcgcctc
ctggccgacgcggctctggcgtcaaagcgtatgctgattgtcggtgacttcgatgccgat
ggtgccacctccaccagtgtgtgtttgcttgcgctgaagatgctgggtattcagggggct
gacttccttattccaaaccgcttcgattatggctatggcctcagtgtgcctttggtggcg
ctcgcggtggaaaagggcgccgaggtgcttatcacggtcgacaatggcatcagcagtatc
gacggcgtggcggcggccaaggccgccgggatgcaggtggtgatcaccgaccaccattta
cccgggcaggtattgccggacgctgacgccatagtcaaccccaaccaacatggctgcccc
tttgccagcaagtctattgccggtgttggcgtggccttttatctgatgctggccctgagg
gccgaactcagaaaccgcggctggtttgaaaagctcggtataaaagagcccaacctggcg
gtactggtggacatagtagcgcttgggactgtggcagacgtggtgagtttggatgccaat
aaccggattctggtggatgccggacttaaacgcgtcagggccggccgttgcaggcccggg
atcacggcgctgctggaagtggccaagcgtaaccctgcccgcgccgtggccgccgacttt
ggttttgccgtgggccccaggctcaatgccgccgggcgcctcgatgaaatgtccctcggg
gtcgaaaccctcttgtgtgacgacatcgtgtatgcccgcaggatggcggccgagctggat
ggcctgaatcaggagcgtcgcgagctggaaaccggcatgcaggccgaggcgttaaagagc
ctcgagcgtttgcagctggaagaatcacaactgccctggggcatagccctgtatcaggat
gactggcatcagggggtgataggcattttggcgtcccgtatcaaagacaggtaccacaga
cccgttattgcctttgccgaagcctcggataccgaggtcaaaggctcggcccgctccatc
aagggcctgcacatgcgcgacttgctggagctgatttccagccgtcaccccgggcttatt
cccaaatttggtggccatgccatggctgctggcctgagccttgccaaatctgatgtcggc
aagttccagaccgtgtttgatgaaaccgtgcgggagctgctggcacctgagctcctcacc
ggcgaaatcctctcggatggtgaactgcccatcgaatacctgaccctggaagccgccaac
cttatccgtgccagcggcccctgggggcagggcttcgaagagccgctgtttgatggtcat
ttcaggttattgcagcagcgtctcgtgggcgaaaagcatctgaagatgttggtggaaacc
gagtgtggccgactgatgctggatgccatcgcctttaatgtggatctcaaagcctggcca
gacgccagcgtgcgccacgtgcagcttgcctaccgactcgatgtgaacgagtttcgcggt
aatcaaagcctgcagctcctggtggagcaaattgaagccaaatga
DBGET
integrated database retrieval system
