Shewanella litorisediminis: JQC75_15770
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Entry
JQC75_15770 CDS
T07182
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
slit
Shewanella litorisediminis
Pathway
slit03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slit00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JQC75_15770 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slit03019
]
JQC75_15770 (rnr)
03016 Transfer RNA biogenesis [BR:
slit03016
]
JQC75_15770 (rnr)
Enzymes [BR:
slit01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
JQC75_15770 (rnr)
Messenger RNA biogenesis [BR:
slit03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
JQC75_15770 (rnr)
Transfer RNA biogenesis [BR:
slit03016
]
Prokaryotic type
tRNA degradation factors
JQC75_15770 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
TFIIE_beta
Motif
Other DBs
NCBI-ProteinID:
QRH01291
UniProt:
A0ABX7G1V1
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All DBs
Position
complement(3571198..3573624)
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AA seq
808 aa
AA seq
DB search
MINDPHFEREQEKYDNPIPSREFILEYLRSQTSPQPRESIAEALKIHDEERLEALRRRLR
AMERDGELVFTRGQCYGLPERMDLMSGTVLGHKDGFGFFRPDNGGDDLFINERDMQLYFH
GDKVLAQKAGIDRRGRRDARIVRLLSERSAALVGRFYVDAGMAFVVADDKRIPHEILIAN
EDKNGARHGDVVVIELTRRPGRYVRAGGKVTEVLGKQMAPGMEIEIALRNYDLPHQWSAV
IEKKLRRIPDYVTDEDKDGRVDLRELPLVTIDGEDARDFDDAVFAERKRGGGWRLWVAIA
DVSHYVRTDSALDKEARARGNSVYFPSQVIPMLPEKLSNGLCSLNPGVDRLCMVAEMTIS
AKGVLSGYKFYPAVMHSHARFTYTQVAAMLEGGEVKEEHKTLFPHLQVLQELYLCLDEQR
AGRGAIAFETLETQFIFNEQRKIDRIVPRARNQAHKIIEECMILANVAAAKFVIKHKGHV
LYRVHEKPSEQKLTQFKDFLAERGLSMTGGLEPEPADYQALMAQVEGRPDAELIQVMLLR
SMRQAIYTPDNEGHFGLALEAYSHFTSPIRRYPDLVLHRVIRYLLAKEQGEASEKWTADG
GYHYQLEELDLLGEECSTTERRADEATRDVSDWLKCEFMQDHVGDSFGGVIASVTSFGLF
VRLDELFIDGLVHISSLGSDYFQYDPQRQRLIGENSGQIYQIGDPVTVKVASVNLDDRQI
ELQMEGERPGRKKAGKKPLTARDRANLEGARSGNGKSGKGGSVRSQLAGGKLGGSDTKKR
ETKAKDGKKSKKATEAKPKAAKRVKRKK
NT seq
2427 nt
NT seq
+upstream
nt +downstream
nt
atgattaacgatccgcattttgagcgcgaacaggaaaaatacgataaccccatccccagc
cgggaatttatcctcgaatatttgaggtctcaaacctcccctcagcctcgcgaaagtatt
gccgaggctttaaaaatccatgatgaagaacgactggaagcactgcgtcgccgactccgt
gccatggaacgtgacggcgagctggtatttacccgtggccaatgttacggcctgcctgag
cgcatggatttgatgagtggtactgtacttggccacaaagatggctttggcttcttccgc
cccgataacggcggcgatgacctctttatcaatgagcgcgacatgcagctctacttccat
ggcgataaggtgctggcacaaaaagccgggatagaccgccgaggccgccgtgatgcccgt
attgtgaggctcttgtctgaacgcagcgccgccctggtagggcgcttttatgtcgatgcc
ggcatggccttcgtcgtggcggatgacaagcgtatcccccacgaaatcctcattgccaac
gaagataaaaatggcgcacgtcatggtgatgtggtggtgattgaacttacccgccgcccc
ggtcgctacgtgcgtgccggtggtaaggtgaccgaagttctgggcaagcagatggcgccc
gggatggaaattgagattgcccttcgcaattacgacctaccacaccagtggtcagcggtg
attgagaagaaactgcgccgcatcccggattatgtgaccgacgaagacaaggacggcagg
gtagacctgcgtgaattgccgctggtgaccatagacggtgaagatgcccgtgactttgac
gatgccgtgtttgccgagcgtaagcgcggtggcggctggcgcctgtgggttgctatcgcc
gatgtgagccattatgtacgcaccgattcggcgctggataaagaagcccgtgcccggggt
aactctgtgtacttcccgtcacaggttatccccatgctgccggagaagctctccaacggc
ctgtgctccctgaaccccggcgtagatcgcctctgtatggtggctgagatgactatctcc
gccaagggcgtgctgtcgggctacaagttctatccggccgtgatgcactcccacgctcgc
ttcacctatacccaggtggcagccatgctggaaggcggcgaggtaaaagaagaacacaag
acgcttttcccgcaccttcaggtactgcaggaactgtatctgtgcctggatgagcagcgt
gcaggccgcggcgccattgcctttgaaaccctggaaacccagtttattttcaatgagcaa
cgcaagattgaccgcattgtgccccgtgcccgcaatcaggcccataagatcattgaagag
tgtatgatcctcgccaacgtggcggccgccaagtttgtgattaaacacaaaggacatgtg
ctttatcgggtgcacgagaagccgtctgagcaaaagctgacgcaatttaaagacttcctc
gccgagcgaggtttgtcgatgaccggtggtcttgaacccgagcccgccgattatcaggcg
ctgatggctcaggtagaaggcaggcccgacgccgagcttattcaggtgatgctgctgcgc
tccatgcgtcaggctatttacaccccggacaacgaaggtcactttggtctggcgctcgaa
gcctacagccactttacctcaccgattcgccgttatccggatttggtgctgcaccgggtt
attcgctatctgcttgcgaaagagcagggcgaggccagcgagaagtggaccgctgatggt
ggctaccactaccagctggaagagctggatctgcttggtgaggagtgttccaccacagag
cgccgcgccgatgaagccacccgcgatgtgtctgactggctcaagtgtgagtttatgcag
gaccacgtgggcgacagtttcggtggcgtaattgcctcggtgaccagctttggcctgttt
gtgcgcctggatgagctctttatcgatggtttggtgcacatttccagtctgggtagcgat
tacttccagtacgaccctcagcgtcagcgtttgattggtgaaaactccgggcagatatac
cagataggcgatcccgtgactgtgaaagtcgcctcggtcaatctggacgacagacaaatt
gagttgcagatggaaggcgagcgtcccggtcggaaaaaagccggtaagaagccgctgacg
gcccgcgacagagccaatcttgaaggcgcacgcagtggtaacggtaagtctggcaaaggc
ggcagcgtacgcagccagctggccggtggcaaattgggtggctcagataccaagaaacgg
gaaaccaaggccaaagacggtaagaaatccaaaaaggcgactgaggctaagccaaaggcc
gccaaacgagttaagagaaagaaataa
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