Shewanella litorisediminis: JQC75_16040
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Entry
JQC75_16040 CDS
T07182
Symbol
rapA
Name
(GenBank) RNA polymerase-associated protein RapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
slit
Shewanella litorisediminis
Brite
KEGG Orthology (KO) [BR:
slit00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
slit03021
]
JQC75_16040 (rapA)
Transcription machinery [BR:
slit03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
JQC75_16040 (rapA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RapA_C
Tudor_1_RapA
Tudor_RapA
Helicase_C
SNF2-rel_dom
ResIII
DEAD
AAA_34
Motif
Other DBs
NCBI-ProteinID:
QRH01342
LinkDB
All DBs
Position
3627437..3630340
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AA seq
967 aa
AA seq
DB search
MSFAVGQRWISDTESELGLGTVVQIEGRMVTLLFPATGENRMFAMAEAPLTRVIYNPGDT
IDSAEGWGMTVDKVEELNGLVFYLGKRTDTGEDTLLRETLLEHNIRFNKPQDRLYAGQID
RIERFGVRYKAQLLRHKQATSPLLGLQGPRVGLIPHQLWIAHEVGRRHAPRVLLADEVGL
GKTIEAGLIIHQQLITGRAERVLVIVPDTLRHQWLVEMLRRFNLRFSVFDEDRCVEAFAD
HDNPFYTEQLVICSLELLRKKRRLEQALDADWDLMVVDEAHHLEWSEDEPSRAYQVVEAL
AAVVPGVLLLTATPDQLGHQSHFARLRLLDPDRFYDYQAFLEEEKGYQAVAEAADALASG
IKLSDEAINGLTELLSEKDIAPAIRQIQAENLDEELRQAARDELLQELLDRHGTGRVLFR
NSRASVKGFPKREFHSHGFELPEQYVTAMRVNAMMGGARTQEARVAQALSPERIYQEFDD
NNASWWKFDPRVDWLIDFLKSHRSKKVLVIASRAETALALEEALRTREGIQATVFHEGMS
IIERDKAGAYFAQEEGGAQALICSEIGSEGRNFQFASHLVLFDLPLNPDLLEQRIGRLDR
IGQRHDVQIHLPFLKHTAQEQLMHWYHEGLCAFELTCPGGHVLFGEFKERLLSVLTGESD
ELDELMADTKARYKALKAAMEQGRDKLLELNSHGGAKAEAIAASLSDADEDTDLIASVIR
LWDVIGIDQDDKGENSIVLRTTDHMMYPTYPGLNEDGVTVTFDRNTALSRDDIALITLEH
PLVQTGLDLITGSDTGTTCVALLKNKALPAGTIFLELIYLAETTAPKASQLYRYLPPTPV
RVLLDKNGNNLSDKVDYDNFDKQLSGVNRHIASKLVNASQTILHPLFAKGEEFAGEALEI
LTRDARARMETQLGAELSRLEALKAVNPSIREEELEHLRQMMQELSGYLGNTQLQLDAIR
LVLVSHN
NT seq
2904 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtttgcggttgggcagcgctggatcagtgacacagaatcggaattgggtttgggc
acagtggtgcagatagagggccgcatggtcactctgctgtttcctgccaccggtgaaaac
cgcatgtttgccatggccgaagcgcccctcacccgggtgatatacaaccccggagacacc
atcgacagcgccgaaggctggggcatgacggtggacaaggtcgaagaattaaacggcctg
gtattttatttgggcaagcgcaccgacacgggtgaagacaccctgctgcgcgagaccctg
ctcgagcacaatattcgtttcaacaagccccaggatcgcctgtacgccggccagattgac
cgtatcgagcgctttggtgtgcgttataaggcgcagttgctgcgccacaagcaggccacc
tcgccactgctgggcctgcagggcccaagggttggcctgattccgcatcagctgtggatt
gcccatgaagtgggccgtcgccacgccccgcgggtattgctcgccgacgaagtgggtctg
ggtaaaaccattgaagcgggcctgattatccaccaacagctgataacaggccgcgccgag
cgggtactggtgatagtgcccgataccctgcgccaccagtggctggtggaaatgctgcgc
cgctttaacctgcgcttctcggtatttgatgaagaccgctgcgtggaggcctttgccgac
cacgacaaccccttctacacagagcagctggtgatttgctcgctggagctgctgcgcaag
aagcgccgattggagcaggcgctggatgccgattgggatctgatggtggtggacgaagcc
caccacctggagtggagcgaagacgagcccagccgcgcctatcaggtggtcgaggccctc
gccgccgtggtacccggggtgctgctgctcaccgccactccggatcaactgggccaccag
agccactttgcccgtttgcgcctgctggatcccgaccgtttttacgactatcaggccttc
ctcgaggaagaaaaaggctaccaggccgtggccgaagccgccgatgccctggcaagcggc
atcaagctttccgatgaggccatcaacggcctgaccgagctcttgtcggagaaagacata
gccccggccattcgccagatccaggccgaaaacctcgacgaagagctgcgccaggccgcc
cgcgatgagctgctgcaggaacttctggaccgccacggcaccggccgggtgctgttccgt
aacagccgcgcctcggtaaagggcttccccaagcgggagttccacagccacggcttcgaa
ctgcctgagcaatacgtgaccgccatgcgggtaaacgccatgatgggcggcgcccgcacc
caggaagcccgggtggcccaggccctgagccccgagcgtatctatcaggagtttgatgac
aacaacgccagctggtggaagttcgacccaagggtcgactggcttatcgactttttgaag
tcccatcgctccaagaaggtgctggtaattgccagccgcgccgagacggcactggcgctg
gaagaagccctgcgcacccgtgaaggcatacaggccactgtgttccacgaaggcatgtcc
atcattgagcgcgacaaggccggtgcctactttgcccaggaagaaggcggcgcccaggcg
ctgatttgctcggaaatcggctctgaaggccgtaacttccagtttgccagccacctggta
ctgttcgacctgcccctgaacccggatttgctggagcagcgtatcggccgtctggaccgt
atcggccagcgccacgatgtgcagattcacctgccgttcctcaagcacacggctcaggaa
caactgatgcactggtatcacgaagggctgtgcgccttcgaactcacctgccccggcggc
catgtgctttttggggagttcaaagagcgtctgctcagtgtgctgaccggtgagagtgac
gagctggatgaactgatggccgacaccaaggcacgctacaaggcgctgaaagccgccatg
gagcagggtcgcgacaagctgcttgaactcaacagccacggcggcgccaaggccgaagcc
attgcagccagcctcagcgacgccgacgaagataccgaccttatcgcctcggtgatccgc
ctgtgggacgtgataggtatcgaccaggatgacaagggtgaaaactccatcgtgctgcgc
accacggatcatatgatgtaccccacctatcccggtctcaacgaggatggggtgactgtc
accttcgatcgcaacacggcactgtcacgggacgatatcgcccttatcaccctggagcat
cctctggtgcagaccgggctcgacctcatcacagggtctgataccggcaccacctgtgtg
gcactgttgaaaaacaaggcgttaccggcgggcaccattttcctggagctgatttacctc
gccgaaaccacagcgcccaaggccagccagctttaccgctatctgccgcccacgccggtg
cgtgtgctgctggataagaacggtaacaacctgtctgacaaggtggactacgacaacttc
gacaagcagctgtccggggtgaatcgccatatcgccagcaagctggtcaatgcctcccag
accatattgcatccgctgtttgccaagggtgaagagtttgcaggggaagcccttgaaatc
ctgaccagggatgccagggcgcgcatggaaacccagctgggcgccgagctctcacggctt
gaggccctcaaggcggtgaaccccagcatccgcgaagaagagctggagcacctgcggcag
atgatgcaggaactgtcgggctaccttggcaatacccagctgcagctggatgccatccgc
ctggtgctggtaagccacaactga
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