Shewanella litorisediminis: JQC75_16455
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Entry
JQC75_16455 CDS
T07182
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
slit
Shewanella litorisediminis
Pathway
slit03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slit00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JQC75_16455 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slit03019
]
JQC75_16455 (rhlB)
Enzymes [BR:
slit01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JQC75_16455 (rhlB)
Messenger RNA biogenesis [BR:
slit03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JQC75_16455 (rhlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-ProteinID:
QRH01419
LinkDB
All DBs
Position
complement(3714569..3715888)
Genome browser
AA seq
439 aa
AA seq
DB search
MSETHLTQQKFADLPLCDEVKQALNENGFEHCTPIQALSLPVLLEKKDIAGQAQTGTGKT
LAFLVATFNHLLTAPIPENRQLNQPRAIVMAPTRELAIQIAKDATLLSKHSGLKVGIVYG
GEGYEAQRKVLDKGVDVLIGTTGRIIDYVRQGVINLGAIQAVVLDEADRMFDLGFIKDIR
FLFNRMPGAKERLNMLFSATLSMKVQELAYDHMNDPVKVEIAPEEKTSRNIKEEIFYPSM
EDKLKLLHSLIEEDWPEKAIVFANTKHQCEKLWASLEADGHRVGLLTGDVPQKKRLKILE
QFTQSELDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGQKGVSVSFA
CEEYALNLPAIEDYIKHSIPVTSYDREALVDIPPPVKIHRKPHLGGRNLRDRNGAPRPSG
AHRSGGGRPPRHDRTRRHS
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaaacacatttaacccaacagaagtttgccgacctgcccttgtgtgacgaggtc
aaacaggcacttaacgaaaacggcttcgagcattgcacgcccatccaggcgctttccctc
ccggtattgcttgagaaaaaagacatcgcaggccaggcccaaacgggtaccggcaagaca
ctcgcctttttggtcgccacctttaaccacctgctgacagcccccatccccgaaaaccgc
caactcaatcagccccgtgccatcgtgatggcacccacccgcgaattggcgattcaaatt
gccaaagatgcgactctgctgtccaagcacagcggactcaaggtgggcattgtttacggc
ggtgaaggctatgaagcccagcgtaaggtgctggacaagggcgtggatgtacttatcggt
accacaggccgcatcatcgattatgttcgccagggtgtgattaacctgggggccatccag
gccgtggtattggatgaagccgatcgcatgttcgatctcggctttatcaaagacattcgt
tttcttttcaaccgtatgcccggcgccaaagagcgtttgaacatgctgttttctgccacc
ctgtctatgaaggtgcaggaactggcgtacgatcatatgaacgaccctgtgaaggtagag
attgccccggaagaaaagacttcccgcaatatcaaagaagaaatcttctacccttccatg
gaagacaaactcaaactgctgcactcactgattgaagaagactggcccgaaaaagccatt
gtgtttgccaacaccaagcatcagtgtgaaaagctgtgggcgagcctggaggccgatggc
caccgcgtaggcctgctgacaggcgatgtgccgcagaagaagcgcttgaaaatcctcgag
cagttcacccagagtgagctggatattctggttgccaccgacgtagctgcccgtggcttg
cacatttccgatgtgtcccacgtgtacaactacgacctgcccgatgactgcgaagactat
gtacaccgtatcggtcgtaccggtcgtgcgggtcagaaaggggtatcggtgagctttgcc
tgtgaggaatatgccctcaacctgccggccatcgaagactacatcaagcacagcatccct
gtgacttcttacgatcgtgaagccctggttgatattcccccaccggtgaaaatccatcgc
aagccccatctcggtggccgtaacctgcgcgatcgcaatggcgcaccacgtccatccggt
gcacatcgcagcggtggtggtcgtccccctcgtcacgacaggacccgcagacactcataa
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