Shewanella litorisediminis: JQC75_17125
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Entry
JQC75_17125 CDS
T07182
Symbol
speF
Name
(GenBank) ornithine decarboxylase SpeF
KO
K01581
ornithine decarboxylase [EC:
4.1.1.17
]
Organism
slit
Shewanella litorisediminis
Pathway
slit00330
Arginine and proline metabolism
slit00480
Glutathione metabolism
slit01100
Metabolic pathways
slit01110
Biosynthesis of secondary metabolites
slit04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
slit00001
]
09100 Metabolism
09105 Amino acid metabolism
00330 Arginine and proline metabolism
JQC75_17125 (speF)
09106 Metabolism of other amino acids
00480 Glutathione metabolism
JQC75_17125 (speF)
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
JQC75_17125 (speF)
Enzymes [BR:
slit01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.17 ornithine decarboxylase
JQC75_17125 (speF)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OKR_DC_1
OKR_DC_1_C
OKR_DC_1_N
Beta_elim_lyase
GKRP_SIS_2
Motif
Other DBs
NCBI-ProteinID:
QRH01547
UniProt:
A0ABX7G2I4
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All DBs
Position
3878963..3881125
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AA seq
720 aa
AA seq
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MNSLKIAASLSVRACFDTKREVVNVLTTDFCDVGAAVVSVTDVNNGIVDKIKNTGLNLPI
FVSVCCEEAFPDDFCEAITGVFELCNAKTDFYGKQVETAVRRYQESLLPPFFGTLKKYVE
MGNSTFACPGHQGGQFFRKHPVGRQFFDFFGETVFRSDMCNADVKLGDLLIHEGAPHDAQ
AYAAKVYNADKTYFVLNGTSASNKVVCNALLAPGDLVLFDRNNHKSNHHGALIQAGATPV
YLETARNPFGFIGGIDSHCFDEAYLRDEIGKVATERVREARPFRLAIIQLGTYDGTIYNA
RQVVDRIGHLCDYILFDSAWVGYEQFIPMMKDCSPLLLELGPDDPGIIVTQSVHKQQAGF
SQTSQIHKKDSHIKGQERYCNHKRFNNAFMMHASTSPFYPLFAALDVNAKMHEGASGRYL
WREAVKAGIEARKLLLKKCKYIQPFIPTTVEGEPWQTFDTEKMADDLRFFEFEPGLKWHA
FEGYEKGQYFVDPCKFLLTTPGINAETGEYEDFGIPATILANFLRENNIIPEKCDLNSIL
FLMTPAEDMAKMQHLVTQIARFEKLIDEDAPLSEVLPNVYRANRERYEGYSIRRLCQEMH
DLYVSRNVKQLQKEMFRAAHFPRAVMNPQDANIAFVRGKAELVPLSEIEGQIAAEGALPY
PPGVLCMVPGEVWGGAVQRYFLALEEGINLLPGFAPELQGVYLERTDNGRVQAMGYVLKR
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atgaattcgttaaaaattgctgccagcttatctgttcgtgcctgttttgataccaaacgg
gaagtcgtcaacgtattaaccactgacttttgtgatgtgggcgctgccgttgtttccgtc
accgacgttaataatggcattgtcgataaaattaaaaataccggtttgaatttaccgata
tttgtttctgtctgctgtgaagaagccttccccgatgatttttgcgaagccatcacaggg
gtatttgagctgtgtaacgccaagaccgatttttacggtaagcaggtggaaactgcggtg
cgccgttatcaggaatccctgttaccccccttctttggcaccctgaaaaagtacgttgaa
atgggtaactccacctttgcctgcccggggcaccagggtggtcagttcttccgtaagcac
cccgtcggtcgtcagttcttcgacttctttggcgaaaccgtgttccgctcggacatgtgc
aatgccgacgtgaagctcggggacctgcttattcacgaaggcgccccccatgacgcgcag
gcctatgccgccaaggtgtataacgccgacaaaacctactttgtgctcaacggcacctca
gcgtccaacaaggtagtgtgtaacgccctgctcgcccccggcgatctggtgctgtttgac
cgcaacaaccacaaatccaaccaccacggcgccctgattcaggccggtgccacacccgtg
tatctggaaacggcccgcaaccccttcggctttatcggcggtatcgactctcactgcttt
gatgaagcctacctgcgggatgaaatcggcaaagtggcaaccgagcgggtaagggaagca
cgccccttccgccttgccatcatccagcttggcacctatgacggtaccatttacaacgcc
cgtcaggtggtggaccgcattggccacctgtgtgactacatcctgtttgactcggcctgg
gtgggctacgagcaattcatccccatgatgaaagactgctcgccgctgctgttggaactc
ggccccgacgatcccggcattattgtgacccagtcggtacacaaacagcaggccggtttt
tcgcagacctcacaaatccacaaaaaagacagccatatcaaagggcaggagcgctactgc
aaccataagcgcttcaacaatgcctttatgatgcacgcctccaccagccccttctatccg
ctgtttgcggcgctggatgtgaacgccaagatgcacgaaggcgccagtggccgctatctg
tggcgtgaagcggtgaaggccggtatcgaagcccgtaagctgctgctgaaaaagtgcaag
tacattcagccctttatccccaccactgtggaaggtgaaccctggcagacctttgatacc
gagaagatggctgacgatctgcgtttcttcgagttcgagcccggcctcaagtggcacgcg
ttcgaaggctacgagaagggccagtactttgtcgacccctgtaagttcctgctcaccacc
cccggcatcaacgccgagaccggcgagtacgaggacttcggtattccggccaccatcctt
gccaacttccttagggaaaacaacatcattccggagaagtgtgaccttaactccatcctg
ttcctcatgacccccgccgaggacatggcaaagatgcagcatctggtgacccagattgcc
cgcttcgagaagctgattgacgaagacgcgcccttaagcgaagtgctgcccaacgtctat
cgcgccaaccgcgagcgttatgaaggttacagcatccgccgcctgtgccaggaaatgcac
gacctctatgtcagccgcaacgtgaagcagctgcaaaaagagatgttccgggcggctcac
ttccccagggcggtgatgaatccacaggacgccaatatcgcctttgtacgtggtaaggcc
gagctggtgccactcagtgaaatcgaaggccagattgcggccgagggtgccctgccttat
ccacccggcgtgctctgtatggtgccgggggaagtctggggcggcgcggtacagcgctac
ttcctggcgctggaagaaggcatcaacctgctgccgggcttcgcccccgaactgcagggt
gtgtatctggaacgcaccgataacggccgggtacaggccatgggttacgtacttaaacgc
tga
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