Shewanella litorisediminis: JQC75_17665
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Entry
JQC75_17665 CDS
T07182
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
slit
Shewanella litorisediminis
Brite
KEGG Orthology (KO) [BR:
slit00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
slit03000
]
JQC75_17665
Transcription factors [BR:
slit03000
]
Prokaryotic type
Helix-turn-helix
Other families
JQC75_17665
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
GAF
Sigma54_activ_2
AAA_lid_14
HTH_8
PAS_4
AAA_5
HTH_23
HTH_30
AAA_3
AAA_2
Mg_chelatase
Phage-MuB_C
HTH_29
PAS_8
HTH_28
HTH_1
HTH_17
HTH_Tnp_1
Motif
Other DBs
NCBI-ProteinID:
QRH01648
UniProt:
A0ABX7G319
LinkDB
All DBs
Position
complement(3985947..3987755)
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AA seq
602 aa
AA seq
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MKSAIQPWLADSWRRSEGAGLSETRPGELKLSRVELDERCERHRQLITQVESEALPLFTR
LMSHTDSRLILSDADGFVLRHWGLSRYSDRLANVALDCGVNWLEEHKGTNAIGTALRAKE
ALSVVGEQHFCRPHRFMSCTASPIFSPSGELIGALDITSERLKHNQQTLLLISSLAQQIE
TALLCALPGGRFRVDLAASRQLLSSGWQGILIADDDGRLLGLNPMARQYLGGASPGMPLG
ELLGDNWQSQQALCPRGELHLATSAINKGALPIKINKTNGLHGVKPLRFHDPQLETAWQQ
ARKVISRKIPLLVQGETGVGKEHFVRQLYQDSRLDGELVAVNCAALPAELIEAELFGYQG
GAFTGASRQGHLGKVRQADGGFLFLDEIGELSLAAQGRLLRVLQEREVTPVGGLKTHRVD
IQVVAATHMDLADMVRHGRFREDLYFRLNGLQVSLPPLRQRADKSRLIHKLHRQYRVNPP
GDEQQLCPQLLTLLEAYSWPGNLRELDNLMQVACLMAEGECELNQAHLSDAHRRVLMQAR
PCCLDRAHSESTQSASESSLKAELDARIQTTLAECGGNISEAARRLGVSRNLIYRSLRRT
DS
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atgaaatctgccattcagccctggcttgccgactcctggcgccgcagtgaaggtgccggt
ctcagcgaaacccgtcccggtgagctcaaactctcccgggtcgagctggacgagcgctgt
gagcgtcaccgtcagctcatcacgcaggtggaatccgaagccctgccgctgtttacccgt
ctcatgtcccacaccgacagccgactgattttgtcagacgccgacggttttgtgctgcgc
cactgggggctgtcgcgctactcagaccgcctggccaatgtggcgctggactgcggcgtg
aattggctcgaagagcacaagggcaccaatgccataggcacagcgctcagggctaaagaa
gccctctccgtggtgggtgagcagcacttttgccgcccccaccgttttatgagctgcacc
gccagcccgattttttcgccgtccggcgagctgattggcgccctcgatatcacttctgaa
aggctcaagcacaatcaacaaacactgcttttgatctccagcctggcgcagcagatagaa
accgcgcttctgtgcgcgctgcccggtggccgctttcgggtagatttggcggccagccgt
cagcttttgagttccggttggcagggcatcctgattgccgatgatgatggccgcttgctt
ggacttaaccccatggcacgccagtatctgggcggcgcgtcgcccgggatgccgctgggg
gagctgttgggtgataactggcagtctcagcaggcgctgtgcccccggggtgagctgcat
ctggctacctcggcgatcaacaagggcgccttgccgattaaaattaataaaaccaacggt
ttgcatggtgttaaaccgctgcgctttcatgaccctcagctcgaaactgcctggcagcag
gcacgcaaggtaattagccgcaagatcccgctgttggtgcagggcgaaaccggggtcggt
aaagaacacttcgtccgtcagctgtatcaggacagtcgactcgatggtgagctggtggcg
gtaaactgtgccgccctgccggccgagctgattgaagccgagctctttggttatcagggc
ggcgcctttaccggtgcctcccgtcaggggcaccttggcaaggtgcgtcaggccgacggc
ggttttctgtttctggatgaaattggcgagttgtcgctggcggctcaggggcggcttttg
cgggtattgcaggagcgggaagtgaccccggtaggcgggcttaaaacccacagagtggat
attcaggtggtggccgccacccacatggatttggccgatatggtgcgccatggccgtttt
cgcgaagatttgtactttcgtctcaacggcctgcaggtcagcttgccgccactgaggcag
cgtgccgataagtcacggctgatccataagcttcaccgccagtaccgggtgaacccgccg
ggagatgagcagcagctgtgtccgcagttactgacgttgcttgaggcctatagctggccg
ggtaacctcagggagctggataacctgatgcaggtggcttgcctgatggcagagggggag
tgcgagctgaatcaggcccatctcagtgatgcccaccggcgggtgctgatgcaagctcgt
ccctgttgtctggacagggcgcattcggaaagcacccaatcggcctcagaatcaagcctt
aaggccgagcttgatgctcgcattcagacaaccctcgccgagtgcggcggcaatatcagt
gaagcggcccgccgccttggggtaagccgcaacctgatctaccgaagcctgaggcgtaca
gacagttaa
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