Spodoptera litura (tobacco cutworm): 111348914
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Entry
111348914 CDS
T08157
Name
(RefSeq) probable DNA mismatch repair protein Msh6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
sliu
Spodoptera litura (tobacco cutworm)
Pathway
sliu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sliu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
111348914
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sliu03400
]
111348914
DNA repair and recombination proteins [BR:
sliu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
111348914
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
Motif
Other DBs
NCBI-GeneID:
111348914
NCBI-ProteinID:
XP_022815618
UniProt:
A0A9J7DQU4
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Position
8:7072202..7089926
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AA seq
1130 aa
AA seq
DB search
MSKRNSTGASNTLFNYFSKTPPANKKVKSELEVDKSANVISPVQNSEKESKAEKKKRERQ
ITPSPEVKHNSDSEDEVPIAPTRRKRIRLNPVDSDDSDVENKADNKMDTTEVEKPSIEKK
LQDSFKYEPNQSPKAKVASKVPNKPTSSTKSSASPPKPSEEKPLAADDGNWVHCKLDWLK
PEKIKDAQKRRPDHPDYDPSTLYVPPEFYKSQTPAHRQWWEMKSSHFDCVLFFKVGKFYE
LYHMDAAVGVNELGFSYMKGEFAHSGFPESAYGRMAATLVSKGYKVARVEQTETPDMMQE
RCKKTGQNSKWDKVVRREICQVSMRGAQVCGLQDNGPAEPTAAYMMAIAEEESNGSSTYG
VCFVDTSIGLIHVGQFQDDKHSSRLLTTLAHYPPALIIYDRKTSGRTSKLLSTHCHSARR
EPQTMWTPEKTLKTLAEKYYRTNADGEWPEGIKPFLYDGDALGLTPAPNCYLGIKALGGV
VACLTHCLLDIQVLGMNQFTSYAPPDVLNKTLPAEVKVENRWKGGSTMVLDAITLRNLRI
VQDEGCLYERLNFCSTHMGKRLLYQWVCAPSCNISVIKERQEAVKTLFDNQELCQDAKTI
LTTLPDLERLLAKVHALGNLKRSKDHPDARAIFYEEKTYSKRKVLDFISILNGFTAALKL
VDLFSDIDSKLLKKITQFHPDGKYPDYRETLKFFKEAFNQAQAEKEGRILPGEGVDQEYD
NTLQLIKEIEEELKDYLSQQEKYFKCRLSYVGTDKKRYQIEVPQSAAAKAGADYNLEGAR
KGYKRFSTCETKDLLARMIAAEEQKSNVLKDLSRRIFEKFSSHYNQWETAVQCLSTLDIL
LAFTEFARQQSGDICLPEITFEEDQKPYLNIVEGRHPCISNVVDFIPNATQLGSAGASLL
LLTGPNMGGKSTLMRQAGLITVLAHLGSYVPAEECKLSLVDRIFTRLGASDDIFSGQSTF
LVEMNETAAIVTHATLHSLVLLDELGRGTSTYDGTALASAVCAELAERSCRVIFSTHYHS
LVHHLSSHPGIMLGHMACMVETDESAPDSEDHIPEETITFLYKLSPGACPKSYGFNAARL
AGIPKEITLKAHQISKNLEKEATCVRAFRDILKMEDNPKDVRAMLAALSI
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagcgcaatagtacaggtgcatcaaacacattatttaattatttctctaaaaca
cctccagctaataagaaagtaaaatcagagttagaagtcgacaaaagtgcgaatgtaatt
tcacctgtgcagaacagcgaaaaagaatctaaagcggaaaagaaaaagcgagagagacaa
attactccatctcctgaggtgaagcacaacagtgacagtgaagatgaggttcccattgct
cccacacgcagaaagaggatcagactcaacccagtggactctgatgactctgatgttgag
aataaagcagacaacaaaatggatacaacagaggttgaaaagccatcaatcgagaagaaa
ctgcaggatagtttcaagtatgaaccaaaccaatctcccaaggctaaggtagcgagtaaa
gtaccaaacaaaccaacatctagtaccaaatcttcagcatcacctcccaaaccctcagaa
gagaaaccattagctgcagatgacggcaactgggtacactgcaaattggactggctgaaa
cctgaaaagatcaaggacgctcagaaaaggagaccggatcatcctgactatgacccctca
actttatatgtgcctcctgaattttataagagtcaaaccccagctcaccggcagtggtgg
gagatgaagtcatctcacttcgactgtgtcctgttcttcaaagtgggcaagttttatgag
ctgtaccacatggatgctgcagtgggtgtcaatgaactgggattctcatatatgaagggt
gaattcgcacattcaggcttccctgagagtgcatacggtaggatggcggccacgctcgtg
tccaaagggtacaaagtggcgcgagtagaacaaacagagacaccggatatgatgcaagag
aggtgtaagaagactggtcagaacagtaaatgggacaaggtagttcgccgcgagatctgc
caggtgagtatgaggggtgctcaagtatgtggcctgcaagacaacggacctgccgagcct
actgccgcttacatgatggctatcgctgaagaggagagcaatggcagcagtacatatgga
gtctgcttcgtggatacctcaataggattgatccacgtggggcagttccaagatgacaag
cattcttctagactactcacgactttggcacattatcccccagcattgataatatacgac
cgcaagacaagcggccgaacgtccaaactgctcagtacccactgccacagcgcgcgcaga
gagcctcaaactatgtggactcctgagaaaacgttgaagactttagctgagaagtattat
agaactaatgcagatggagagtggcccgagggaatcaaacctttcctatatgacggcgac
gctctgggcctgacccctgccccaaactgctacctgggcatcaaagcgctgggcggagtg
gtcgcctgcctcactcactgcctgctagacatccaggtgctaggcatgaaccaattcacc
tcctacgcaccccctgacgtactaaacaagaccttaccggctgaagttaaggtcgagaat
cgctggaagggcggtagtactatggtcctcgacgcgattacgttgagaaacctgaggatt
gtacaggatgaaggatgcttgtatgaaagattgaatttctgttctacgcatatggggaag
agattactgtaccaatgggtgtgcgctccaagttgcaatatatctgtaataaaggagagg
caggaggctgtgaagacgttgtttgacaaccaagaactctgccaggacgccaagactatc
ctcaccacattacctgatttagagaggcttttggcgaaagtacacgcattaggtaatctg
aaacgttcgaaagatcatccagacgctcgcgctatattctatgaggaaaagacgtattcg
aaacgaaaagttctagactttatatccatcctgaacgggttcacagcagcgttgaaactt
gtggatttattttccgatatcgactctaaattgctgaagaagatcacgcaattccatcct
gatgggaaataccctgattatagagagactttgaagttttttaaggaagctttcaaccaa
gcacaagctgaaaaagaaggtcgtattctcccgggcgaaggcgtcgaccaggagtacgac
aatacgttgcaacttatcaaggaaatagaggaagaactgaaggactacctcagtcaacag
gagaaatacttcaaatgtcggttatcatacgtgggcacagacaagaagaggtatcaaata
gaagtaccacagagcgcggccgccaaagccggcgccgattacaatctggaaggcgcaaga
aaaggatacaagagattttctacctgtgagactaaggacctcctggcccgcatgatagca
gcagaagaacagaaatcaaacgtactaaaagacttgagtcgtagaatattcgagaagttc
tcctctcactacaaccagtgggagacggcggtgcaatgtttgtctacactcgacatactg
ctggcgttcactgagttcgcaagacaacagagcggggatatatgtctgcctgaaattact
tttgaagaggaccagaagccatatctaaacatcgtggaaggccgccatccctgtatatct
aacgtggtggacttcatccccaacgccacccagctgggctcggcgggcgccagcttgtta
ctgttgactggccccaacatgggaggcaagtccacgctcatgaggcaggccggcctcatc
acggtcctcgcgcatttaggtagttatgtaccagctgaagaatgcaagctaagtctggtg
gaccgtatcttcactcgcctgggtgcgtcggacgacatcttctccggccagtccacgttc
ttagtggagatgaatgagaccgccgccatagtgacgcatgccactctacactcacttgtg
ttactcgacgagttagggcgcggcacatcgacatacgacggcacggcgctcgcgtcagca
gtgtgcgcggagctagccgagcgaagttgtcgcgtcatattctctacgcactaccattct
ctagtgcaccacctgtcctcacatcccggcatcatgctgggacatatggcctgcatggta
gaaacggacgaatcagcgccagacagcgaagaccatattccggaagaaacaataacgttc
ctatacaaactgtctccgggtgcttgtccaaaatcctacggtttcaacgcagcccgatta
gcgggcatacctaaagaaatcactctcaaagcacatcaaatatccaaaaatcttgaaaaa
gaagctacttgtgtccgcgcctttagagacattctcaaaatggaggacaaccctaaagat
gtcagagcaatgttggcagctctgagtatttag
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