Spodoptera litura (tobacco cutworm): 111350244
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Entry
111350244 CDS
T08157
Name
(RefSeq) 5'-3' exoribonuclease 2 homolog
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
sliu
Spodoptera litura (tobacco cutworm)
Pathway
sliu03008
Ribosome biogenesis in eukaryotes
sliu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sliu00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
111350244
09123 Folding, sorting and degradation
03018 RNA degradation
111350244
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sliu03021
]
111350244
03019 Messenger RNA biogenesis [BR:
sliu03019
]
111350244
03009 Ribosome biogenesis [BR:
sliu03009
]
111350244
03016 Transfer RNA biogenesis [BR:
sliu03016
]
111350244
Transcription machinery [BR:
sliu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
111350244
Messenger RNA biogenesis [BR:
sliu03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
111350244
Ribosome biogenesis [BR:
sliu03009
]
Eukaryotic type
Pre-60S particles
RNases
111350244
Transfer RNA biogenesis [BR:
sliu03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
111350244
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC_4
Motif
Other DBs
NCBI-GeneID:
111350244
NCBI-ProteinID:
XP_022817481
UniProt:
A0A9J7IJG1
LinkDB
All DBs
Position
11:11425011..11449826
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AA seq
986 aa
AA seq
DB search
MGVPAFFRWLSRKYPSVIVECIEQKPTDVDGQLVYIDSSLPNPNGVEFDNLYLDMNGIIH
PCTHPEDKPPPKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRRFR
ASKETQEKIDEIARIRDELLAKGAYLPPERPKEAHFDSNCITPGTPFMDRLSKCLHYYIH
DRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRRQRVQPDHDPNTQHVLCGADADLIML
GLATHEPNFTIIREEFKPNKPRPCDVCGQLGHEMKECTGTNPDASLVRSDPAFGNQDNFI
FVRLSVLREYLEKELQMPNLPFPYDFERALDDWVFMCFFVGNDFLPHLPSLEIREGAVDR
LVNLYKKCVYKTRGWLTDSGDVKLERVQVIMTELGHMEDEIFKRRHQNEINFKAREKVKK
RQQQRVNFEMLEKTQFAPMAVGQNQSKPMENVRREAANMRVAGMQNEAAQEAENRGRKRS
AHAAGLDDDDDDKNDEVRLWEQGFKERYYESKFEVARDNMEFRYRVALQYVRGLCWVLRY
YYQGCASWKWYFPYHYAPFASDFVNICGLSTKFEEGTQPFRPLEQLMGVFPAASSTHVPK
PWAKLMSDPFSPIIDFYPTDFKIDLNGKKFAWQGVALLPFVDEERLFKALEPHYDDLTEA
EKLRNIRGHDRLYVGTANASYSFLLGLYSSAGGKLRQLIEDKHKYPYRCDGVTGDVMLSK
DCVVIGGQLPSPVIGLQPVLGNHVVCVRFVDPAYDKEFPARRLEGAQQPPRVLKPGNLSH
EENRNWRPQIGMVRSNTIASMEEAGRRMLGHHLPRGNYASIPPPEQQHHRSQSFGPRPGG
YIPYQNQAEGRSYSSTGQEQGGGYNRNYSQGPRNYGQRNQDFSQNSRGYQPDQGHQSNQG
YQSSQGHQSNQDNRPINKYQRNSNYVSNYQGYQSQQSNQSRDRNAGSISSGHGYRPPNQG
YSSAEGSRDPRSRYNRDRRQHGRSWN
NT seq
2961 nt
NT seq
+upstream
nt +downstream
nt
atgggagtaccagcattctttcgctggttaagtagaaaataccccagcgtcattgttgaa
tgtattgaacagaagccaaccgacgttgatggccaacttgtgtacattgactcttcactc
ccaaacccaaatggggtggagtttgacaatctgtacctggacatgaatggtatcattcat
ccgtgcacccatcctgaagacaagccaccccctaaggatgaagacgagatgatggtggcg
atctttgagtgcatcgacagactgttccgcattgtgcgacccaggaagctgctctacatg
gctattgatggagtggcgcccagagctaagatgaaccagcagcgttcccgtcgtttccgt
gcctccaaagagacccaggagaagatcgacgagattgctcgcatccgcgacgagttgctg
gctaaaggtgcttacctgcctccagagaggcccaaggaagctcactttgattccaactgc
atcactcctgggacgcccttcatggaccgcctcagcaaatgtctgcactattacattcat
gacagattaaacaatgacccaggatggaagggcattaaagtgatcctgtcagatgccaat
gtacccggcgagggagaacacaagatcatggactacatcaggcggcagcgggtgcaaccg
gaccatgacccaaacactcaacacgtgctgtgtggagcggacgcggatctaataatgttg
gggctggctacgcatgaacccaacttcacaattatccgtgaggagttcaagcccaacaag
ccgcgcccctgcgatgtctgcggacagctcggacacgaaatgaaggaatgtacaggcaca
aatcctgacgcgtctctagtgagatcagatccagcattcggcaaccaggacaattttata
ttcgtccgtctgtccgtcctccgggagtacttggagaaggagctgcagatgccaaacctc
ccattcccttatgactttgagagggcgttagatgactgggtgtttatgtgcttcttcgtg
ggcaacgacttcttgccacatctacccagcttggagatccgcgagggcgccgtggatcgg
ctcgtgaacttgtataagaagtgtgtttataaaactagaggttggctcacagactcgggc
gacgtgaagctggagcgggtgcaggtgattatgacagagctcggacacatggaggacgag
atcttcaagcgccgacaccagaacgagatcaacttcaaggctagagagaaggtcaagaag
aggcaacaacagcgcgtcaattttgagatgctggagaagacgcagtttgcccctatggct
gtcggacagaatcagtcgaagccaatggagaacgtacgtcgtgaggccgccaacatgcgc
gtcgccggtatgcagaacgaagctgctcaagaagcagagaatcgtggccgcaagcggtcc
gcccatgcggcggggctggacgacgacgacgatgacaagaatgacgaggtgcggctgtgg
gagcaggggttcaaggagaggtactacgagagcaagttcgaggtcgccagggacaacatg
gagttccggtaccgcgtggcgctgcagtacgtgcgcgggctgtgctgggtgctgcgctac
tactaccagggctgcgccagctggaagtggtacttcccgtaccactacgcaccatttgcc
tcagacttcgtcaacatctgcggactctccaccaagttcgaggagggcacgcaacctttc
cgtccgctagagcagttgatgggcgtgttccctgcagccagttccactcacgtgcctaaa
ccttgggcaaagctcatgagcgatccgttttccccaatcatcgacttttatccgacggac
ttcaagatcgacttaaacggcaagaagtttgcctggcagggcgtggcactgctacccttc
gtcgacgaggagagactcttcaaggcactggagccccactatgatgacctcactgaggct
gagaaactacgcaacatccgtggccacgaccgtctatacgtgggcacggccaacgccagc
tactcgttcctgctgggactgtactccagcgctggggggaagctgaggcagctcattgag
gacaaacacaagtatccgtaccgctgcgacggggtcacgggggacgtcatgctcagcaag
gactgtgttgttattggaggtcagctgccatctccagtgataggtctgcagccagtgctg
ggcaaccacgtggtatgtgtgaggttcgtggaccctgcgtacgacaaggagttcccggcg
agacgactagagggcgcccagcaacccccgcgggtactcaaacctgggaacttgtcacat
gaagagaataggaactggaggcctcagattggcatggtccgctccaacacgatcgcgagc
atggaggaggcgggccgccgcatgctgggccaccacctgccgcgcgggaactacgcctcc
ataccgccgccggaacaacaacatcatcggtcacagtccttcggaccacgacctggcgga
tacattccttatcagaaccaagccgaaggacgtagttacagttctacggggcaggaacaa
ggcgggggttacaaccgtaattatagccagggtccccgtaactatgggcagagaaaccag
gactttagccagaacagccgcggataccagccggaccagggtcaccagtctaaccaaggc
taccagtcgagtcaaggtcaccagtccaaccaggacaaccgacctataaacaagtaccag
cgcaattccaattacgtcagcaattaccaaggataccaatcacagcaatcgaatcagtca
agagatagaaacgcgggatctatcagtagcggacacggatacaggcctccaaatcaaggg
tattccagcgcagaaggatcacgagacccgaggagtagatataatagggataggagacaa
catggcaggtcctggaactaa
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