Spodoptera litura (tobacco cutworm): 111352837
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Entry
111352837 CDS
T08157
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
sliu
Spodoptera litura (tobacco cutworm)
Pathway
sliu03020
RNA polymerase
sliu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sliu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
111352837
09124 Replication and repair
03420 Nucleotide excision repair
111352837
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sliu03021
]
111352837
03400 DNA repair and recombination proteins [BR:
sliu03400
]
111352837
Enzymes [BR:
sliu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
111352837
Transcription machinery [BR:
sliu03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
111352837
DNA repair and recombination proteins [BR:
sliu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
111352837
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
DUF3137
EutB
Motif
Other DBs
NCBI-GeneID:
111352837
NCBI-ProteinID:
XP_022821255
UniProt:
A0A9J7IS36
LinkDB
All DBs
Position
16:8591647..8599673
Genome browser
AA seq
1899 aa
AA seq
DB search
MATTNDSKAPVRQVKRVQFGILSPDEIRRMSVTEGGIRFPETMEGGRPKLGGLMDPRQGV
IDRSSRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKVLRCVCFYCSKLLVSPTNP
KIKEVVMKSKGQPRKRLTYVYDLCKGKNICEGGEDMDIGKEGEEGKRGSGHGGCGHYQPS
IRRQGLDLTAEWKHANEDTQEKKIIITAERVWEILKHITDEESFILGMDPKFARPDWMIV
TVLPVPPLSVRPAVVMFGSAKNQDDLTHKLADIIKANNELMRNEQTGAAAHVLAENIRLL
QFHVATFVDNDMPGMPKAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPD
PNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNAQYPGAKYIVRDNGERIDLR
FHPKPSDLHLQHGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTS
PYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTK
RDVFLTKEQVMNLLMFLPTWDGKIPQPCILKPQPLWTGKQIFTLIIPGPVNMIRTHSTHP
DEEDDGPYKWISPGDTKVVVEHGELLMGILCKKSLGASAGSLLHICMLELGHETAGRFYG
NIQTVINNWLLLEGHSIGIGDTIADPQTYQEIQRAIVKAKEDVIEVIQKAHNMELEPSPG
NTLRQTFENRVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQ
QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDT
AVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLAGETVEFQNLPTVK
LSNKAFEKKFKFDPSNERYLKRIFSEDIIKELTESGYVISDLESEWEQLCKDREVLRQIF
PTGESKVVLPCNFKRMIWNAQKTFHINKRMPTDLSPIKVISGVKDLLKKCVIVAGEDRLS
KQANENATLLFQCLVRSTLCTKFVSEEYRLSQVAFEWLIGEIESRFQQAQVNPGEMVGAL
AAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGVAARD
AEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDPTKISPW
LLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNNEESKFQ
DNDEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIAKVYMHLPKTEAKKRIIITEQGEFK
AIAEWLLETDGTSLMKVLSERDVDPIRTFSNDICEIFQVLGIEAVRKTVEKEMNAVLQFY
GLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLLDAASHAEVD
PMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKLGMEMGGLGVGGVGGGMYFGVGTPSMTP
LMTPWSTQNTPGYGSSAWSPGQVGSSMTPGGPSFSPSGASDASGLSPAYSAWSPQPGSPG
SPGPPLSPYTSPAGASPSYSPTSPVYAPASPSLTPTSPHYSPTSPSYSPTSPNYSPTSPI
YSPTSPSYSPTSPGYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPT
SPSYSPTSPSYSPTSPAYSPTSPGYSPSSPSYSPTSPVYSPASPSYSPSSPNYTPTSPAY
SPTSPSYSPTSPAYSPTSPSYSPSSPKYSPSPNYSPTSPSVAGRSPTYSPTSPQYSPTSQ
QYSPTSPAYSPSSPQHPGSTRYSPSSPNYSPSPNYSPSSPGYSPSSTKYSPTSPTYTPTS
PNYSPSSPAYSPSSAGPSTYSPTSPTYSPTSPNYDDGDD
NT seq
5700 nt
NT seq
+upstream
nt +downstream
nt
atggctaccacgaatgattcgaaggcgcctgtgcgccaagttaaaagagtacaatttggt
atattgtctccagatgaaatccgacggatgtctgtcactgaagggggcattcgcttccct
gaaaccatggaaggaggtagacccaagcttggtggacttatggatccacggcaaggggtg
atcgacaggagttcgagatgtcagacttgtgctggaaatatgactgagtgtcctggacat
tttggacacattgatttagcaaaaccagtatttcacattggatttataacaaagacaatt
aaagttctgcgatgtgtctgtttctactgctcaaagctgcttgtcagcccgacaaaccca
aagataaaagaagttgtaatgaagtcaaaaggacaacctcgtaagagattgacttatgta
tatgacttgtgtaaaggcaagaatatttgtgagggtggtgaagatatggatatcgggaag
gaaggtgaggagggcaaaagaggttctgggcatggaggttgtggtcactaccagccatct
ataaggaggcaaggtttggacctcactgcagagtggaaacatgccaatgaagatacacaa
gaaaagaagattattattacagcagaaagagtgtgggaaatccttaaacatatcacagat
gaggaatcattcattctgggtatggaccccaagtttgctagacctgactggatgatagtc
acagtgctgcctgttcctccattatctgtgagacctgctgtagtgatgtttggttcagct
aagaatcaagatgacttgacacacaaactggctgatatcatcaaagcgaacaatgagctg
atgaggaatgaacagaccggtgcagctgcacatgtgctcgctgaaaacatcagattactc
cagttccacgtcgccacattcgtagataatgacatgcctgggatgcccaaggccatgcag
aaatctggaaagccactcaaagctatcaaggctcgtctaaaaggaaaggaaggaagaatc
agaggaaacctcatgggcaagcgagtcgacttctcagcacgtactgtcattacaccagat
cctaacttgcgtattgaccaagtaggagtaccaagatctattgcacaaaacttgacattc
cctgagcttgtaacaccattcaatattgacagaatgcaggagcttgtacgcaggggtaac
gcacaatatcctggcgccaagtacattgtacgagacaatggagaaaggatagatttacga
tttcacccaaaaccatcagatttgcatttacaacatggatacaaagttgaacggcactta
agagatgatgatcttgttattttcaaccgacaacctacactacacaagatgagtatgatg
gggcacagagtgaaagtgcttccgtggtcaacattccgtatgaatttaagttgtacctct
ccctacaacgccgatttcgatggtgatgaaatgaatttacatgtgccgcagtcaatggaa
acaagggcagaggttgaaaacatccatataactcctcgacaaattatcacaccacaagca
aataaacccgtcatgggtattgtgcaagatacattgacagctgtaaggaaaatgacgaag
cgtgacgtattccttacgaaggaacaagttatgaaccttcttatgtttttacccacatgg
gatggtaaaatcccacagccctgcattttgaaacctcaaccattgtggactggtaaacaa
atctttacgctaattattcctggtccagtcaacatgattcgaacacattctacacatcct
gatgaagaagatgatggtccatacaagtggatttcgcctggagatactaaagtcgttgta
gagcatggtgaactgctcatgggcattctgtgtaaaaaatcacttggtgcttcagcaggt
tctttgctacatatttgcatgttagaattgggccacgagacagctggtcggttttatggt
aatattcaaactgtgatcaacaactggctactcctagaaggtcactccattggtatcggc
gatacaattgccgatcctcagacctaccaagaaattcagcgcgccatcgtcaaggccaaa
gaggatgtcatagaagtcattcaaaaagctcacaatatggagttggagccttctcccggt
aacactctcaggcagacattcgaaaatcgagtgaaccgtattctgaacgacgctcgtgac
aagactggtggatcagccaagaaatctcttactgaatacaacaacttaaaggctatggtg
gtctctggttctaaaggttccaatattaatatttctcaggttattgcctgtgtaggtcaa
cagaacgttgaaggtaaacgtattccgttcggattccgtaaaagaacattgccgcatttc
atcaaagacgattacggtcctgagtccagaggtttcgtcgaaaactcgtatcttgccggt
ctgacaccatcagagttttatttccacgctatgggaggacgtgaaggtcttatcgatact
gccgtcaaaactgctgaaactggatacatccaacgtcgtttgataaaggctatggagtct
gtcatggttcactatgacggcactgtccgcaactcagtaggacaactcattcagttgaga
tatggcgaagacggtttggcgggagaaacagtggagttccagaatttgcccactgtaaaa
ctgtctaacaaggcatttgaaaagaaattcaagtttgatccttcaaatgaaagatatttg
aagaggattttcagtgaggacattataaaggagttgacagaatctggttatgttattagt
gatcttgagagtgaatgggagcaactttgcaaggacagagaagtgctacgtcaaatcttc
ccaactggtgaatctaaagttgtactgccttgtaatttcaagcgaatgatttggaatgcc
cagaaaactttccatatcaacaaaagaatgccaacagatttgagtccaattaaagtgata
tcgggagtaaaagacttgcttaaaaagtgtgttattgtagcaggcgaggatcgtctgtcg
aagcaagccaacgaaaacgctactctgctattccaatgtttagtgcgttccactttatgc
accaagtttgtgtctgaagagtacagactttcacaagtagcttttgagtggctgattgga
gaaattgaaagcagattccagcaagcacaggtaaaccctggcgaaatggtgggtgcttta
gctgcacagtctcttggtgagcccgccacacagatgacattgaacactttccactttgct
ggtgtgtcatccaaaaacgtaactctcggtgtgcctcgtcttaaggaaattattaatatt
tccaagaaacctaaagctccatctctaacggtgttcttgactggagttgcagccagagat
gctgaaaaagccaagaatgtactttgcagacttgagcatactaccttgcgcaaggtgaca
gcaaacactgccatctattacgaccctgatccacaaaacactgtcattgctgaagatcaa
gaattcgttaatgtatactacgaaatgcctgacttcgacccaacaaagatttcgccgtgg
ctgctgcgtatagagttagatcgtaagaggatgactgataagaaattgaccatggaacag
attgcagaaaagatcaatgctggatttggtgacgatttgaactgcattttcaatgacgac
aacgctgaaaagcttgtgctgcgtattaggattatgaataatgaagaaagtaaattccaa
gataatgatgaggagactgtggataaaatggaagacgacatgttcttgagatgtattgaa
gcgaacatgttgtctgatatgactctacagggtatagaggctatagcaaaggtgtacatg
catttaccaaagactgaagctaagaaacgcattataataacagaacaaggagaatttaag
gctatagccgaatggttgttggaaactgatggtacttcattaatgaaagtactttcggag
agagatgtcgaccctattaggaccttcagtaacgacatttgtgaaatattccaagtactg
ggtattgaagccgtgcgaaagacggtagagaaagaaatgaacgctgtgttgcagttctac
ggtctatacgtgaactaccgacatctggccttgctttgtgacgttatgactgccaagggt
catcttatggctatcactcgtcacggtattaacagacaagacaccggagctctcatgaga
tgctcattcgaagaaacagtcgatgtattattggatgctgctagtcatgctgaagtagat
cctatgagaggcgtgtctgaaaacattatcatgggacaactaccacgcatgggaactggt
tgcttcgacttgttacttgatgctgaaaaatgtaaacttggtatggaaatgggcggtctt
ggtgttggcggagtgggaggtggcatgtacttcggtgtcggcactccatccatgacgcca
ctgatgacaccgtggtccacacagaacactcctggatatggaagcagtgcatggtcacca
ggccaagtgggaagcagtatgacaccgggtggtccatcattctcgccatcaggagcgtca
gatgcatcaggtctatcgccagcgtacagcgcgtggtctccgcagccgggctcccccggc
tcccccggccctccgctgtcgccctacacatctcccgcaggcgcttcaccatcgtattct
cctacgagcccagtgtacgcacctgcctcccccagccttacaccaacgtcgccacattat
tccccaacaagtccgtcatattcaccgacttctccaaactattctccaacgtcgccaata
tattcgccaacatcgccgagctattctcccacatcccccggatactccccaacatcgcct
tcttattcgccgacatcacccagttactctcccacttcaccgagctattctccaacgagc
cctgcgtattcaccaacatcgcccagctattcgccgacatcaccaagctactcgccaacg
agtccgtcttattcaccgacaagtccatcatattcaccgaccagtccagcatattctccc
acatcgccgggatactcgccttcttccccgagctattctccaaccagtccagtgtacagt
cccgcttcacccagttactcgccgtcatcaccgaactacactcctacgtcgccggcgtat
tcaccaacgagtccctcttattcaccgacttcacccgcatattccccaacttctccaagt
tattcaccatcctcacctaaatattctccttcacccaactactctcctacatcaccatct
gtggcaggaagaagccctacttattccccgactagcccacagtactcgcctacgagccaa
cagtactccccaacgagtcctgcatattcgccgtcgtctccccaacacccgggaagcacg
cgctattcaccctcctcaccaaattattcaccgtctccgaattactctccttcctccccg
ggatattctccatcatcgacaaagtactccccaacctcaccaacgtacaccccgacctcg
cccaactactccccatcatcccccgcgtattccccgtcctctgctggacctagcacatat
tctccaacttcacctacatactctcccacttcacctaactatgatgatggcgatgattaa
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integrated database retrieval system
