Spodoptera litura (tobacco cutworm): 111353917
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Entry
111353917 CDS
T08157
Name
(RefSeq) pre-mRNA 3' end processing protein WDR33-like isoform X1
KO
K15542
polyadenylation factor subunit 2
Organism
sliu
Spodoptera litura (tobacco cutworm)
Pathway
sliu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sliu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111353917
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sliu03019
]
111353917
Messenger RNA biogenesis [BR:
sliu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
111353917
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_THOC3
Beta-prop_WDR5
WD40
Beta-prop_WDR3_1st
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_WDR3_2nd
Beta-prop_EML_2
WDR55
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
Beta-prop_EML
WD40_Gbeta
Beta-prop_IFT140_1st
EIF3I
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_Aladin
ANAPC4_WD40
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR19_1st
WD40_MABP1-WDR62_2nd
Beta-prop_RIG_2nd
Beta-prop_EIPR1
eIF2A
Beta-prop_WDR35_TULP_N
WDR90_beta-prop_4th
Beta-prop_WDR75_1st
WD40_RFWD3
Beta-prop_SCAP
Beta-prop_Vps41
WD40_MABP1-WDR62_1st
Beta-prop_IFT122_1st
PEP5_VPS11_N
Beta-prop_WDR41
Beta-prop_HPS5
Tricorn_2nd
Beta-prop_DCAF4
Beta-prop_WDR11_2nd
WD_LRWD1
Beta-prop_ACSF4
Frtz
Motif
Other DBs
NCBI-GeneID:
111353917
NCBI-ProteinID:
XP_022822896
UniProt:
A0A9J7IPS0
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Position
17:6513265..6523758
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AA seq
862 aa
AA seq
DB search
MDFGHPPPNMGIPPPNMVMNMNMGPPVNMPGRNNMRHIRPCNYQMRFPPQGPLNMTQDDF
DGKRLRKSVMRKTVDYNAAIIKALECRVWQRDWRDRHALQPDAMYTPDLLPPPSYPDNPI
NAVTTRFVKTATNKMRCPIFAVAWTPEGRRLITGASSGEFTLWNGLTFNFETILQAHDSP
VRSMVWSHGEGWMVTGDHSGFIKYWQSNMNNVKMYQAHKEAVRGISFSPSDSKIVTCSDD
GSLRIFDFYRCQEERVMRGHGADVKCVQWHPTKALIVSGSKDNQQPIKLWDPKSGTALST
LHAHKSTVMDLKWNDNGNWLITASRDHLLKLFDIRKLGTELQIFRGHKKEASSVVWHPTH
EGLFCSGGSDGAILFWNVGTDKEVGCIEGAHESIVWTMAWHPLGHILCSGSNDHTSKFWT
RNRPGDLMRDKYNLNTLPPGVQDDHDLEEPAVIPGMGPEDKVEIFSSDTDKVIPGLDLDT
TFVPMEFEKKVKKVPYSKPIPRNFQAQWNHAPTSDETANEVLTQALVESVPGAIPLQQLT
PSAIFIYGKLIGVEPGSKLEKAISDGPLALKKYIASGELEELHDVMPHLEDDADEENFQP
FEYPDPENEDAQNDENNERDDYENYDQDNEYYNNEMDASEQNNQDDEQGFNNGPDANNMG
SMNNMPPPMGNMMRPPMPPMGNMGPMGARPNMGPMHPMGPPMHMPPPPHIANMMANMPPP
MGAMPPMGNMPPMNNMQPRPPFPDNGFNKPHFDSGYDNQSQFSQNDDEYNEDDSSYEQNY
DDENYNNDDGNGDDGYNNNMRNQRWDGGFRGRGQNRGRGRGMNGHGVRNNWRGNAGPRGA
PRGRRGTGANRNFRRGGKPVSN
NT seq
2589 nt
NT seq
+upstream
nt +downstream
nt
atggatttcggacaccctccaccgaatatggggatacctcctccaaacatggttatgaat
atgaatatgggaccaccagttaatatgcccggtagaaacaacatgcgccatattaggccg
tgcaactaccagatgcggtttccacctcaagggccactgaacatgacacaagatgatttt
gatggtaaacgcttacgtaaatccgttatgagaaaaactgtagattataatgctgctatt
ataaaagctttagagtgtcgcgtttggcagagggactggcgggaccgacacgcgctgcaa
cctgacgctatgtatactcccgacttgttaccgccaccctcttatcccgataatcctata
aatgccgtcactactcgatttgttaaaactgctactaataaaatgcgatgtccaattttt
gccgtggcttggacacccgaagggcgacgtttaataactggggcatcatctggagagttt
acattgtggaatggattaacatttaattttgaaacaattcttcaagctcatgattctcct
gtgaggtcaatggtttggtcccatggcgaaggttggatggttactggagatcactcagga
tttattaagtattggcaaagcaatatgaacaatgttaagatgtaccaagctcataaagaa
gctgttaggggtattagttttagtcctagtgattccaaaattgtcacttgttcggatgat
ggttcactgagaatatttgatttctatagatgtcaagaagaaagagtaatgaggggacat
ggtgctgatgtgaaatgtgtccagtggcatcctactaaagcactgattgtgtcaggaagt
aaagataaccaacaaccaataaagttgtgggatccaaaatctggtacagctttgtctacg
cttcatgcacataagtctactgtgatggatctgaaatggaatgataatggcaattggtta
attactgcttctcgtgatcatcttctcaaactatttgatattcgtaaattaggtacagag
ttacagatatttagaggtcacaaaaaagaggcatccagtgttgtgtggcatccaacgcat
gagggtttgttttgttcaggtggttcagatggagccatcttattttggaatgttggtact
gataaagaagttggctgtattgaaggagcccacgaatctattgtctggacaatggcttgg
catcctcttggtcacattttatgttcaggttccaatgaccatacatctaagttctggact
cgaaaccgacctggagatctgatgagagacaaatataatctcaacactttaccaccagga
gttcaggatgatcatgacttagaagaacccgcagtaatacctggtatgggacctgaagat
aaggtagagatattttcttcagacactgataaggttattcctggtctagatttggatact
acatttgttcccatggaatttgagaagaaagttaagaaagtaccatacagtaaacctatt
ccaagaaatttccaagctcaatggaaccatgctccaacctctgatgagactgctaatgaa
gttttgactcaagctctagtagaatctgtaccgggggctatacctcttcaacaattaaca
ccgtcagcaatttttatttatggtaaactgattggtgtggagcctgggtcaaaattagag
aaagctatatctgatggaccattggcactaaaaaaatatattgcctcgggtgaattagaa
gagttacatgatgtaatgcctcatttagaggatgatgcagacgaagaaaatttccaacca
tttgaatatccagaccctgaaaatgaagatgctcaaaatgatgagaataatgaaagagat
gactatgaaaattatgatcaagataatgaatattataataatgaaatggatgcaagcgaa
caaaacaatcaagatgatgaacaagggtttaacaacggacctgatgcaaataatatgggt
tctatgaacaatatgccaccacccatgggtaacatgatgcgacctccaatgccaccaatg
ggaaatatgggtccaatgggtgctcggcctaatatggggcccatgcatccaatgggtcct
cctatgcatatgccccctcctcctcatatagctaacatgatggcaaatatgccaccacct
atgggtgccatgccacctatgggcaacatgccaccaatgaataatatgcaaccacgtcca
ccttttcctgacaatggatttaataaacctcatttcgattcaggttatgataatcaatcg
caattctctcaaaatgatgatgaatataatgaagatgattcatcatatgaacagaattac
gatgatgagaattataacaatgatgatggcaatggtgatgatggatacaataataatatg
cgaaatcagagatgggatggcggctttaggggacgcggccaaaaccgtggaagaggtcgc
ggcatgaatggccacggagtgcggaacaactggagaggaaatgctggtcctcgtggtgcc
cctcgtggacgaagaggcactggcgccaacagaaacttcaggagaggcgggaaacctgtc
tccaactag
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