Spodoptera litura (tobacco cutworm): 111354918
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Entry
111354918 CDS
T08157
Name
(RefSeq) probable ATP-dependent RNA helicase YTHDC2
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
sliu
Spodoptera litura (tobacco cutworm)
Brite
KEGG Orthology (KO) [BR:
sliu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sliu03041
]
111354918
Enzymes [BR:
sliu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111354918
Spliceosome [BR:
sliu03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
111354918
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HA2_C
YTH
OB_NTP_bind
R3H
Helicase_C
DEAD
Ank_2
Ank
AAA_19
Ank_5
HA2_N
Ank_4
AAA_22
nSTAND3
AAA_25
AAA_14
T2SSE
Cas3-like_C_2
PhoH
SRP54
Motif
Other DBs
NCBI-GeneID:
111354918
NCBI-ProteinID:
XP_022824316
UniProt:
A0A9J7E8V0
LinkDB
All DBs
Position
20:12121726..12169767
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AA seq
1348 aa
AA seq
DB search
MSSKKGRRHGNKHFPIAESVSIALKIQLDKFISDENETELKFPTFLSAQERGFIHETVAK
LGLKSKSRGKGVNRYITIYKRIGSTIIQNDAKLILDSNMRCTIKELLSAFPVTSKEKDDL
SSCPEKERSPQLTHKTMGQLNNGVAQVPNTQYNPDLLKFREKLPVYEQRQELINAILHNQ
VIIVAGATGCGKTTQLPQLVLDQCQEQKLPARIYCTQPRRISAVSVAERVAYERMEKIGQ
SIGYQIRLESRVSPRTVLTYCTNGVLLRTLMAGDASLTGVTHIFVDEVHERDKFSDFLLI
ALRDALPRCKDLKLILMSATMDTQIFSRYFNNCPVITIPGRLHEVQRFYLEDILKISQYK
TPKMIQVEKELKAKLKSGNSYWSHLEGQKQDDAGSSKDIKEDKDNMMEPSLQADMDEFLD
ECFNEGTLDSFTQILYMYISEGVPVSCGQSRSRRTGLMAAAARGLTETIAQMLQIGADPT
AKDKDGKTAYDYAVENNHTDCAKLLSTFNLTEEPKGNADDDSAADNFLLDVYHHTMSEEL
IDHDLMLALIKYIHVNMPKGSILVFLPGYDDIVTLRDMIQSCSDMNSHKYQIFTLHSNMQ
TLDQKKVFNPLPNARKIIISTNIAETSITIDDVVYVVDSCKVKEKYYESGGGVCSLQCVW
TSRAGCQQRAGRAGRTAPGKCYHLCSRRRFSTLPLNSVPEILRVPLQELCLHTKLLATGN
TPIADFLSKALEPPSFLAVRNAVSLLKTIGALTPMEDLTEIGQHLLDLTVEPKLGKMLLY
ACVMKCLDPILTIVCSLANKEPFQISMNPENRKKGSLARKEFAADSYSDHMALLRAFQAW
QTARANGTERAFCAKNLICGATMEMIVGYRSQLLAQLRALCLVKARGSGDIKDVNLNSEK
WHVVKAVLVSGLYPSIARVDRDSSTLRTSKEVKVAFHPSSTLHQGGGITGSQKSVHNLPT
DWVVFEEISRAGRFCFIRCNTLVTPLTVALFGGPLRLPNSALTQRANPPGLSSDSDSEAD
ENNASPDAAVITIDDWMAFTTDAADALNVFYLRQKLCALVIRRMSNPAKPMTPLDEQILS
TVVHIMGAEEKNVGLNQPSGIGQRPKPLTVDSPNWRSRLENDEQYRHENKNYYPQYNQNE
GGFPGGNFYNNAYGGYRNGQGRPGGWRNDVPQPFSPQSYSGPKSPMSPNGKTLLANIEKY
GEGAEGGAGGAGGAGGARYFVCRADDAHGVELAQAAGTYSFAQNTAKKLHKIKQEGSRVI
IFFACASAFKFMGCAALQEGGALEWITTGHVPFHTIRHIGNSLAGGARVCTMRDGAEICA
GAGRALLGAHQRRRHHHPRAIQKHSNDS
NT seq
4047 nt
NT seq
+upstream
nt +downstream
nt
atgagttctaaaaagggaagacgtcatggaaacaaacattttcctatagctgaatctgtg
agcatagcactgaagattcagttggataagttcattagtgatgaaaatgagactgagctt
aagtttcccaccttcttgtctgcgcaagaacgaggattcatccacgagacggttgctaaa
ctcgggctgaagtcgaaatcgcgcgggaaaggtgtgaatcgctacataactatatacaag
aggattggctcaacaataatacagaatgatgccaaactcatattggactccaacatgcga
tgtaccatcaaggagttgctcagtgcatttcccgtcaccagtaaggagaaggatgacctt
agcagctgtccggagaaggaaagaagtccgcagctcacacataagaccatgggacagctg
aataatggagttgctcaggtacccaacacacagtacaatccagatctgttaaagttcaga
gagaagctaccagtgtatgaacaaaggcaggagctcatcaatgcaatactacataaccag
gtgataatagtagcgggcgcgaccgggtgcggtaagacgacccagctgccgcagctggtg
ctggaccagtgccaggaacagaagctgcccgcgaggatctactgcacgcagccacgacgc
atctccgctgtttcagtagctgagagggtggcatacgagcgcatggagaagataggccag
tccatcgggtaccagatccgcctggagtcccgcgtcagtccgcgcaccgtgctcacgtac
tgcaccaatggagtactgctcaggacgctcatggccggggacgcgtcgctcacaggagtg
acgcatatattcgtggacgaggtgcacgagcgtgataaattcagtgacttcttactgatt
gcactccgggacgctctgccgcgctgcaaggacctcaaactcatactcatgtctgccacc
atggacacgcagatattctcacggtatttcaacaactgcccagtgattacaatcccgggt
cgtctacacgaggtacagaggttctatctggaagatatcctcaagatctcacagtacaag
actcctaaaatgatacaagttgagaaggaactgaaagcgaagctgaaaagtggaaatagt
tattggtcccaccttgagggtcaaaaacaagacgacgcaggcagcagtaaagatataaag
gaagataaagacaacatgatggagccttctttacaggctgacatggacgagttcctcgac
gaatgcttcaatgaaggcacgctggactcgttcacgcaaatcctgtacatgtatatctcg
gagggcgtgccggtgtcgtgcggccagtcgcggtcgcggcggactggcctcatggcggcc
gccgcgcggggactcacagagaccatcgcgcagatgttgcagattggcgccgaccccact
gcaaaggacaaagacggcaaaacagcatacgattacgctgtagaaaacaaccacacagat
tgtgccaagttattatccacatttaacttaaccgaggaaccgaaaggcaacgcagacgat
gatagtgcagcggacaacttccttctagatgtctaccatcataccatgtcagaagaatta
atagaccatgatctcatgctagctttaatcaaatatatccatgtaaatatgccaaaaggc
agtatcttggtctttttacccggctacgatgatatagtaactctaagagatatgatccag
tcttgttcagacatgaacagtcataagtaccagatttttactctgcatagtaacatgcag
acattggatcagaagaaagttttcaatccgttacctaatgcgaggaagattataatttca
actaatatcgctgagacctcgattacgattgatgatgttgtgtatgtggtggattcttgt
aaggtaaaagagaagtactacgagtcaggtggcggagtatgttccctacaatgtgtgtgg
acgtctcgcgccgggtgtcagcagagagctggccgggctggacggaccgcgccagggaag
tgctaccatctatgctcacgacgacgattctccaccctgccactaaactccgtccctgaa
atactccgcgtgcctctacaagaactttgtctgcataccaagctcttagcgactggcaac
actcccatagcagacttcctatccaaagccctagaaccaccttccttcttagccgtcaga
aacgccgtctccttactcaagaccatcggtgctttaactccaatggaagaccttactgaa
attggacaacatcttctagaccttaccgtggaaccgaaactaggcaagatgttgttgtac
gcgtgcgtaatgaagtgcctcgatcctattctaacgatagtatgtagtttggccaataag
gaacccttccagatatcaatgaaccctgaaaataggaagaagggaagtttggctcgaaag
gagttcgcagcggacagttattccgaccacatggccttgttgagggcgttccaagcttgg
cagactgccagggctaacgggacagaacgtgcattctgtgccaagaacttaatctgtggt
gctactatggagatgatcgtaggataccggtcacagttactggctcagttaagagcgcta
tgtttagtgaaagcgcgaggctcaggagacataaaggacgtcaatctgaactccgagaaa
tggcacgttgtgaaggctgtgttagttagtgggttatatccctcaatagcgcgcgtggat
agagactcctctactttgagaacgtcgaaggaagtgaaggtagccttccatcccagctct
acattacaccagggcgggggcatcactgggtcacagaagtctgtacacaacctgcccact
gactgggtggtgtttgaagagatatccagagctggcaggttctgtttcattcgctgtaat
actttagtgacgccattgacggtagccttgttcggtggaccgttgcggttgccaaactct
gccttgacgcagcgagccaacccgcccggactgtccagtgactccgacagtgaggcggat
gagaacaacgcgtcccctgatgccgctgtcataactatagacgactggatggccttcact
actgatgctgcagacgctctcaacgtattctacctccggcagaaactctgtgcactagta
atacgtcgcatgtctaacccagctaaacctatgacgcctctagacgagcagatactaagt
actgtagtacatataatgggcgctgaggagaagaacgtaggtctgaatcagccgagcggt
atcggacagagaccgaaacctttgacggtagactctccgaactggcggtcgaggctggag
aatgacgagcagtatcgtcacgaaaataagaattattaccctcagtataatcagaatgag
ggcggatttccaggagggaacttttataacaatgcttatggggggtataggaatggtcag
ggtaggcctgggggatggaggaacgatgttcctcagccgttttctcctcagtcgtacagc
ggtcccaagagtccgatgtcccccaacggcaagacgttgctggccaacatagagaagtac
ggcgagggcgcggaggggggcgcggggggggcggggggcgcggggggcgcgcgctacttc
gtgtgtcgcgcggacgacgcgcacggcgtggagctggcgcaggccgccggcacatacagc
ttcgcgcagaacacggccaagaaactgcacaaaattaaacaggagggtagtcgcgtgata
atattcttcgcatgcgcgagtgcgttcaagttcatggggtgcgccgccctacaggagggc
ggagcgctagagtggatcactaccggacatgtgcctttccatactatacgccacatcggc
aactccctggcgggcggggcccgcgtgtgtacgatgcgcgacggggccgagatctgcgcg
ggcgcgggccgcgcgctgctgggcgcgcaccagcggcgccgccaccaccacccgcgcgcc
atacagaaacactccaacgactcctga
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