Spodoptera litura (tobacco cutworm): 111354975
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Entry
111354975 CDS
T08157
Name
(RefSeq) LOW QUALITY PROTEIN: regulator of nonsense transcripts 1-like
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
sliu
Spodoptera litura (tobacco cutworm)
Pathway
sliu03013
Nucleocytoplasmic transport
sliu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sliu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
111354975
03015 mRNA surveillance pathway
111354975
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sliu03019
]
111354975
Enzymes [BR:
sliu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
111354975
5.6.2.5 RNA 5'-3' helicase
111354975
Messenger RNA biogenesis [BR:
sliu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
111354975
mRNA cycle factors
Common to processing body (P body) and stress granule
111354975
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
UvrD-helicase
Helicase_RecD
DEAD
ATPase
AAA_16
AAA_22
NPHP3_N
SRP54
nSTAND3
AAA_5
UvrD_C_2
AAA_7
Motif
Other DBs
NCBI-GeneID:
111354975
NCBI-ProteinID:
XP_022824439
UniProt:
A0A9J7EB82
LinkDB
All DBs
Position
20:complement(6935973..6943677)
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AA seq
1037 aa
AA seq
DB search
MSVDAYGPSSQTLTFLDTEEADLIGADTQGSEFEFTDFTLPSQSQTQASQHDHGLSSSNQ
VNGLGRSDLSSKVSNVTNAIAELQFEEEDEALYSKELPDHACKYCGIHDPATVVMCNICN
KWFCNGRGNTSGSHIINHLVRAKHKEAALHRDGPLGETLLECYSCGARNVFVLGFIPAKA
DSVVVLLCRQPCAAQSSLKDMNWDQEQWKPLISDRAFLSWLVKVPSEAEQMRARQVTPQQ
IGRLEELWRDNVDATFQDLEKPGVDEEPHQVLLRYEDGYQYQNIFGPLVKLEADYDKRLK
ESQTQEGIEVRWDVGLNKKTIAYFTLAKTDSDMKLMHGDELRLRYVGELHKAWSGVGHVI
KVPDNYGDDVGLELKSGAGAPLDCTSNFVVDFIWKSTSFDRMQLALRKFAVDDSSVSGYI
YRRLLGHEVEEVLFRVHLPKHFSAPNLPDLNRSQVYAVKHALQRPLSLIQGPPGTGKTVT
SATIVYQLVRQNSGPVLVCAPSNTAVDQLTEKIHRTGLKVVRLCAKSREAMESSVSFLAL
HEQARALGSADSELRKLTRLKEEAGELSAADERRYRALRRAAERRLLDAADVVCTTCVGA
GDPRVARMRFQSILIDEGMQSTEPECMVPVVLGARQLILVGDHCQLGPVVMCKKAAKAGL
SQSLFERLVVLGIRPFRLEVQYRMHPELSRFPSDFFYEGSLQNGVSAEERRLHKIDFPWP
RPDRPMFFYVTQGQEEIAGSGTSYLNRTEAANVEKLTTRFLKAGVRPEQIGIITPYEGQR
SYLVQHMQYQGSLHAKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGFLSDPRRLN
VALTRAKYGLIVVGNPKVLSKQPLWNHLLAFYKERRVLTEGPLSNLKESAIQFAKPKKLV
NAQNPGSHFMSTSMFDAREALVPGSVYDRARALRDPLAYVGPERAALLHAPVPAAAFSAH
RGLRAPRFXHERPARRRPPRLSQEPLSQQPPLSLSQGASQPDFSQESAAPDCPSQPDGLL
SQDSTYQGGFRARCSQY
NT seq
3114 nt
NT seq
+upstream
nt +downstream
nt
atgagtgttgacgcttatggaccgagctcacaaacactcacgtttttggatactgaggaa
gcggatcttattggggctgatactcagggctctgaattcgaattcaccgacttcaccctt
ccatctcagagccaaacacaggcctcccaacatgatcatggcttgtcatcttcaaatcag
gtgaacggtttgggtcgttcagatttgtcatcgaaagtgtctaatgtaactaatgctata
gcagagttgcaatttgaggaagaagatgaggccttgtacagcaaggagttgcctgaccac
gcgtgcaagtactgtggcatacatgacccggccactgttgtcatgtgtaatatttgcaac
aagtggttctgcaatggtcgaggtaacacctctggctcacacatcatcaaccacttagtc
cgtgccaagcacaaggaagctgccttgcatagagatggcccacttggggagactttgctg
gaatgctactcatgcggtgccaggaatgtattcgttcttggctttataccagctaaggcg
gattccgttgttgtattgctgtgccgacaaccatgtgcagctcaaagctccttgaaggac
atgaactgggaccaagagcaatggaaaccattgatctctgaccgagcctttctctcttgg
ctggtgaaagtcccttctgaggcagagcagatgagagctcgccaggtgactccgcagcaa
ataggacgcctcgaagagctgtggcgtgacaatgtggatgctaccttccaagacttggag
aagcctggtgtagatgaggagcctcatcaagtacttttgagatatgaagatggttatcag
taccagaacatctttggtcctctggtgaaattggaagctgattatgataagagactgaag
gagtctcagactcaagaaggcattgaggtgcgctgggatgtgggacttaataagaaaaca
attgcttactttaccctggctaagacagatagtgatatgaagttgatgcatggagatgag
cttagattaagatatgtaggtgagctacataaagcgtggtcaggtgttggccacgtgatc
aaggtgccggacaactatggcgatgacgtcggccttgaactgaagagcggcgccggcgca
ccgctcgattgcacttccaactttgttgtagacttcatctggaaaagtacttcttttgac
aggatgcaactcgctttgcgtaagttcgctgtggacgactcctctgtgtctggctacata
tatcgtcgcctgctaggacacgaagtggaagaggttttgttccgcgttcacttgccgaag
cacttcagtgctcccaacttgcctgaccttaatcgttctcaggtctatgcagttaagcat
gcgctacagcgtccactgtccctaattcaaggcccgcccggtacgggaaaaaccgtgacg
tctgccacgattgtataccaactggtgagacagaacagtggcccagtactcgtctgcgct
ccgtccaacaccgccgtcgaccagctcactgagaagatccatagaactggcctcaaggtc
gtcagactttgcgccaagtctcgagaagctatggagtcgtcggtgtcatttttggcactc
cacgagcaagctagggccttaggctcagctgacagcgagctcaggaagttgactagattg
aaggaagaagctggagagctgtctgcagccgacgagaggagataccgcgcactgcgccgc
gctgctgagcgacgtctgctggacgccgccgacgtcgtctgcaccacgtgtgtgggtgca
ggcgacccgagagtcgcacgcatgcgcttccagtccatactcatagacgagggcatgcag
tccaccgagcccgagtgtatggtgcccgtagtactgggcgcccgacaactgatcctcgtg
ggagaccactgccagctgggtcccgtggtcatgtgcaagaaagcagccaaggctggcctc
agccaaagtcttttcgaacgtttagtcgtcctgggtatccgtccattccgtcttgaagtc
caatatcggatgcatcctgaactgtcacgtttcccttctgacttcttctatgaaggttct
cttcaaaatggagttagtgctgaagaacgtcgtttgcataaaattgacttcccttggccg
agacccgatcgcccaatgttcttctacgtaacacaaggacaagaagaaattgctggttct
ggaacatcctacttgaacagaactgaagctgctaatgtggaaaaactcactacacggttt
ttgaaagcgggagtgcgacccgaacagattggtatcattactccgtacgagggtcaacga
tcatacctcgtccaacacatgcagtatcaaggaagcttgcatgccaaactctaccaggag
attgaagtagctagtgtagacgctttccaaggccgagaaaaagatataattatcatgtct
tgcgtccgttccaacgagcatcaagggattggtttcttgagcgatccacgtcgtcttaac
gtagccctaacacgcgctaagtacggactcatagtagtcggcaacccgaaagtgttgagt
aaacagccactatggaatcatctgttagctttctacaaggaacgtcgtgtcctaaccgag
ggcccgctctcgaacctgaaagagtccgccattcaattcgcgaagccaaagaagttggtg
aacgcgcaaaacccgggctcgcacttcatgtcgacgtctatgttcgacgcgcgcgaggcg
ttagtgccaggctccgtgtacgatcgcgcgcgcgcgctgcgtgacccactggcgtacgtg
ggccccgagcgcgccgcgctgctgcacgcgccggtgccggccgccgccttctccgcgcac
cgcggcctgcgcgcgccgcgcttctagcatgagcggcccgcgcgccgccgcccgccacgc
ctgagccaggagccgctgtcgcagcagccgccgctgtcgctgtcgcagggcgcctcgcag
ccggacttcagccaggagtcggcggcgcccgactgtccgtcgcagcccgacgggctgttg
tcgcaggactccacgtaccagggcgggttccgagcgcgctgcagccagtactga
DBGET
integrated database retrieval system
