Spodoptera litura (tobacco cutworm): 111358198
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Entry
111358198 CDS
T08157
Name
(RefSeq) putative mediator of RNA polymerase II transcription subunit 26
KO
K03678
exosome complex component RRP45
Organism
sliu
Spodoptera litura (tobacco cutworm)
Pathway
sliu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sliu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111358198
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sliu03019
]
111358198
Messenger RNA biogenesis [BR:
sliu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
111358198
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box_2
HMG_box
RNase_PH
HMG_WDHD1
RNase_PH_C
YABBY
Motif
Other DBs
NCBI-GeneID:
111358198
NCBI-ProteinID:
XP_022828914
UniProt:
A0A9J7IX73
LinkDB
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Position
27:complement(10799964..10817986)
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AA seq
637 aa
AA seq
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MRDVFLSNCEKNFINKIVVEGHRLDGRTYDESRSLNISFGSDYGSCMVSLGETKVLANVS
CEVVQPKQIRPNEGTIYINLEISPMAAPQFEANRQTEFSVYLNRLLEKCYKDSKCVDLES
LCIVVEEKVWSLRVDIKVLNHDGNIIECASIATITALAHFRRPDVTRSGDSVIIHDISER
DPIPTVLFHYPVCTTYAIFNNDVLLSDPNFLEEQVCTSFSDESDTAGGLLVIGVNQYKEP
QGQSSPDSEHNNQQANGIQQNHQTLQQVQQEQNQAIQQQQNQLQQQLQQQNLQQALQQHN
RTLQQTLQQQQQSQQETLQQMLQQHQQQQQQQHQQQQQQQQQQQQQQQQQALQQSLQQTL
QVSQAQAQAIVQAQAALQQQVAQTLQQQQQTLHEQLQAVQQQQIQAALQRQSATLQELQH
QAQQQALLAQAQATVKQKMPRARAYNKPRGRMTAYAFFVQTCREEHKKKHPDENVVFAAF
SKKCAERWNTMSEKEKQRFHDMAEQDKRRFDLEMQNYVPPKDMKVRGRKRQQMKDPNAPK
RSLSAFFWFCNDERSKVKANNPEYTMGDIAKELGRRWAAADPETKSKYESLSEQDKARYD
REMTAYKKGPLALTQQQAAVVPDVDEDGDFDAEEEYK
NT seq
1914 nt
NT seq
+upstream
nt +downstream
nt
atgagagacgtatttttatcaaattgtgaaaagaattttataaataaaattgtagttgaa
ggacatcgtttagatggtagaacctatgatgaaagcagatcactgaacatatcctttgga
tcggattatggaagctgtatggtttcattaggagaaacaaaagtcctagcaaatgtatcc
tgtgaagtagtacaaccaaaacaaataaggccaaatgaaggaaccatatacattaatttg
gagatcagtccaatggcagcccctcagtttgaggccaatagacagactgagttttctgtg
tacctcaacagattactagaaaaatgttacaaagactcaaagtgcgttgacctggagtcc
ttgtgtattgttgttgaagaaaaggtctggtccctacgagtagacatcaaggtcctaaat
catgacggaaacataatagaatgtgcaagtatagctactataactgccctggctcacttc
aggcggcccgatgtcacccgcagtggagacagtgtcattatacatgacatttctgaaaga
gatcccatacctacagtattattccattatcctgtatgcacaacttatgctatattcaat
aatgatgtgctactatcagaccccaattttctagaagaacaagtatgcactagcttctca
gacgagtctgacactgctggaggacttttagtgattggagtaaaccagtacaaagaacca
caaggccagtcaagtcctgattctgaacacaataatcagcaagctaatggtatacaacag
aaccaccagactctgcaacaagtacaacaggagcaaaaccaggctatccagcagcaacag
aaccagctgcaacagcagctgcagcaacagaatttacagcaagctctgcagcaacataat
cgtacattgcaacaaactttacagcaacaacaacaaagtcaacaggaaactttgcagcaa
atgttacaacagcatcaacagcaacagcagcagcaacaccagcaacagcaacaacagcag
cagcaacagcagcaacaacaacagcaacaagctttacagcagagcctgcaacagactctg
caagtgagtcaagcacaagctcaagccattgtgcaagcacaggcagctttgcaacagcaa
gttgcacaaactctgcagcaacagcaacagactctgcatgaacagttgcaagctgtacag
caacaacaaattcaagctgcattacaacggcaatctgccaccttacaggaattgcagcat
caggctcaacagcaggcgctactagctcaagctcaggccactgtgaaacagaagatgccg
agggcgagggcatacaataagccgaggggtcgcatgacagcttatgcattctttgtacaa
acctgccgtgaagaacacaagaagaaacatcctgatgaaaatgttgtctttgctgcattc
tcaaagaagtgcgctgagaggtggaatacaatgtcagagaaggagaagcaacggttccat
gatatggctgagcaggataagagacgattcgatctggagatgcagaactacgtgccacct
aaggacatgaaagtgcgcggacgcaagcggcaacagatgaaggaccccaacgcgcccaag
agatcgctatcagctttcttctggttctgcaatgacgagcgttcgaaggtgaaggcaaac
aacccggagtatacaatgggtgatattgccaaggagttgggcagacgctgggccgctgcc
gatcccgagaccaagtcaaaatacgagagtttatcggagcaggacaaggcgagatatgat
agggagatgacggcgtacaagaagggtcccctggcgctgacgcagcagcaggcggcggtg
gtgccggacgtggacgaggacggcgacttcgacgccgaggaggagtacaagtga
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