Spodoptera litura (tobacco cutworm): 111359188
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Entry
111359188 CDS
T08157
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16-like
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
sliu
Spodoptera litura (tobacco cutworm)
Pathway
sliu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sliu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111359188
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sliu03041
]
111359188
Enzymes [BR:
sliu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111359188
Spliceosome [BR:
sliu03041
]
Complex C
Other components
Step II factors
111359188
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_22
DEAD
nSTAND3
T2SSE
Sigma54_activat
AAA_30
ABC_tran
PhoH
Sigma54_activ_2
AAA_7
ATPase
Flavi_DEAD
NB-ARC
AAA_25
TsaE
AAA_16
AAA_33
AAA_29
cobW
AAA_23
Motif
Other DBs
NCBI-GeneID:
111359188
NCBI-ProteinID:
XP_022830414
UniProt:
A0A9J7IYQ0
LinkDB
All DBs
Position
28:12121552..12130632
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AA seq
661 aa
AA seq
DB search
MSEEDENLHRLAGSSGDAPGGLIIKKKDPPAEFQFAKPSLLGLDKLAAAKRKQNRLISFQ
DDTNEDDGDDSKSEASSSKERKYRKHNEETPTYTGGISEQARERMLERLQKREKEAKEKG
VHHSTQEEKKSRSKDDEDDRYYRYRYDRRDRDRDRRRDDRRDRDRDKDRRKDGRDSERSY
RDSDRRGESSRRSNYEPRFKDEPRTPSMKVLKPTDKTAWDDDDDDPKAPIRKSSWDFPTP
LTRDGGDRSQRSERSGRPLRDYKGRLYENTPRASPHKFASSRRGVDIDDPEWEEAEKKLD
RAWYNMGEGEADESDPFAGTSADYVARKEEQIEKRRNRKVSAQRQQIDKDNELWERNRML
TSGVVHAINVNNDLDEESVDRVHLLVHNIVPPFLDGRIVFTKQPEPVIPVKDPTSDMAMN
ARKGSALVKAFREQKERRKAQKKHWKLEGTKIGNIMGIQKKEEEMEDGPTKDAYKYAEHM
DKDAPEVESKSDFVKKMTIAEQRRFLPVFAVREELMQVIRENSVVIIVGETGSGKTTQLT
QYLHEEGFSRLGTIGCTQPRRVAAMSVAKRVSDEMNTKLGDEVGYAIRFEDCSSASTVIK
YMTDGILLREGLREPDLDNYCAIIMDEAHERSLSTDMLFGLLREVSDLLLQAYGTKNLWL
S
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaagaggatgaaaacttgcatcgtttggcgggatcttctggggatgctccgggc
ggtcttataatcaaaaagaaagatcctccagcggagtttcagtttgccaagccttcgttg
ttagggttagataagctggcagcagccaaacgtaagcagaaccggctaatatcgttccag
gacgatacgaacgaggatgatggtgatgacagtaagtccgaggccagtagttcaaaagaa
cgtaaatacagaaagcataatgaggaaacaccaacttacaccggtggtatatcagagcaa
gcacgagaacgcatgcttgagagattacagaaaagagaaaaagaagcaaaagagaaaggt
gtacatcattcaacacaagaagaaaagaaatcacggtctaaagatgatgaggatgatcgt
tactaccgttatcgctatgacaggagggaccgtgatcgtgatcgcagaagggatgataga
agggacagggaccgtgataaagatagacgtaaagatggaagagactcggaacggagttat
agagacagtgacaggagaggagaaagttctaggaggagtaactatgaaccgaggtttaaa
gatgagcctaggactcctagcatgaaagtcctaaaaccaacggacaagacagcctgggat
gacgatgacgatgatcccaaggctcctatacgtaagtccagttgggacttcccaactcca
ctgactcgggacggtggtgatcggtcacagaggagtgagaggagtggaagaccactgagg
gattacaaaggaagattgtatgagaatacaccgagagcttcacctcataagttcgccagt
tcgaggcgtggagttgatattgatgacccagagtgggaggaggctgagaagaaactggac
cgagcttggtacaatatgggtgaaggtgaagcggacgagtcagatccttttgccggcaca
tcagcagactacgtagctcgcaaggaggaacaaatagagaaacgtagaaacaggaaggtc
tccgctcagagacaacagattgacaaggacaatgaactctgggagcggaacagaatgctc
accagtggtgtcgtacatgctatcaatgttaataatgacttggatgaggagagcgtggac
cgcgtgcacctgttggtccacaacatcgtgcctccgttcctggacggcaggatcgtcttc
accaagcaaccggagcccgtcatacctgtaaaagatccgacgtcagatatggcgatgaat
gcccgcaaaggctcagctctcgtgaaggcgttcagggaacagaaggaaagaaggaaagcg
caaaagaaacattggaagttagagggaactaaaattggtaacatcatgggcatacagaag
aaggaggaggagatggaggacggtcccactaaggacgcttacaagtacgctgaacatatg
gacaaagacgctccggaagtggaatcgaagtcagatttcgtgaagaagatgacgatcgct
gaacaacgtcggttcctcccggtgttcgcagtcagagaggaactcatgcaggtcatcagg
gaaaacagtgtcgtcatcattgttggtgagacgggcagtggtaagacgacccaactgacg
cagtacctgcacgaggaggggttcagtcgcctcgggaccatcggctgcacccagccacgt
cgtgtcgccgccatgtctgtcgccaagcgagtctctgatgaaatgaatactaaactcggt
gacgaggtgggctacgcgattcgtttcgaggactgttcgtctgccagcacggtgatcaag
tacatgacggacggcatcctgctccgcgaggggctgcgcgagcccgacctcgacaactac
tgcgccatcatcatggacgaggcccacgagcgctcgctctccaccgacatgctgttcgga
ctgctcagagaggtcagtgatttgcttttacaggcctatgggactaagaacctgtggctt
tcttag
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