Spodoptera litura (tobacco cutworm): 111359349
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Entry
111359349 CDS
T08157
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
sliu
Spodoptera litura (tobacco cutworm)
Pathway
sliu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sliu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111359349
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sliu03019
]
111359349
Enzymes [BR:
sliu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
111359349
Messenger RNA biogenesis [BR:
sliu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
111359349
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
Motif
Other DBs
NCBI-GeneID:
111359349
NCBI-ProteinID:
XP_022830629
UniProt:
A0A9J7ELP6
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All DBs
Position
29:11878276..11905881
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AA seq
690 aa
AA seq
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MEVVRKNFKETLPLVKESIDKADFLAIDTEFTGLINGRDVTIFDSPEDYYLRLMNGSSEF
LLIQFGMSCFYWDEKRNHYLNDTYNFYLYPRGRPGPDRLFLCQSSSLDFLASNGFDFNKL
IREGISYMTSATETKLRENLAERQLSYSKEKDAVRIPDENRQQIEDICNKVKNFIEKSTD
TEMEINRCNSFIRMLLFQELKLRFKDEVIVDTKVLENKNRILKVIRKTADMDDQDTLRKK
KEWDELEEAIGFSRVAQMISQSEKLVVGHNMLLDLLHTLGHFFQQLPSDYPSFKEFSHCM
FPKLLDTKYMSSLPPFKDKLGSSVLTELLSTLGEPPFSLPKIGSRQGRGYSHLDDKEHEA
GYDAYITGLCFLAMHGHLARMRGEDSDRVQPQSVALKPFLNKLFLAKTARQDSPYINLDG
ADPTPPRDHVFHLVFPKEWQRSDLSQLFSPFGAVTVYFLDECSAFVGLDQRDQASDVMRV
LSKNNRVTLTPYHKYKSGGSGGDTEMALRSERKSDTYKLINKADAKSRQGLSKSNLAGLR
TSLQVPQLPRSPKSPMSPQPTQQRHKVNRTRSNSASLTTQPVSTRKRTSSGVFHVDGSEP
VAKKSISPPLPDKTTNGRDKTDTGDTGKQDDDAVKKKDSSDKKKTGSEKKKDKAEKKKDN
VEKKDKIVEKFDSKAMSDCVTAFKESDSWD
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atggaggtagttcgtaaaaattttaaggaaacattacccttagtcaaggagtctatagat
aaagctgactttttggcgatagatacggagtttacagggcttataaatggtcgagatgtc
accattttcgattctccggaggattattaccttcggttaatgaatggctccagtgaattt
cttctaatacaattcggtatgagttgcttttattgggatgagaagaggaaccactatctg
aatgatacgtacaatttctacctgtacccgcgaggccggccagggcccgatagattgttc
ctctgccagagctccagcttagattttctggcatcaaatggttttgacttcaataaactt
ataagagaaggtatttcatacatgacatctgcgactgagactaagctaagagaaaacctg
gcagaaaggcagctctcatattccaaagaaaaggatgcagtaagaataccagatgaaaac
agacaacaaattgaggatatatgtaataaggtaaagaatttcattgagaaatcgacggac
acggaaatggagataaatagatgcaactcgtttataaggatgctgctcttccaggagtta
aaacttaggtttaaagatgaagttattgttgacacgaaggtcttggagaataaaaatagg
atactaaaagtgatacgtaaaacggcggatatggatgaccaagacactttacgaaaaaag
aaagaatgggatgagctggaggaagctattggcttctcgagagttgcacaaatgatcagt
cagtcggaaaagctggtagtgggtcacaatatgttgctggacctgctccacacgctgggc
cacttcttccagcagctgccgtctgactacccgtccttcaaagagttctcacactgcatg
ttcccaaagctactagacacgaagtacatgtcaagtttaccgccattcaaagacaagcta
ggatccagtgtacttacagagttactgtccacgcttggcgaaccaccattctctctgcct
aaaattgggtctcgccaaggccgaggctactcccacctggacgacaaggagcacgaggcc
gggtacgacgcgtacatcacaggactgtgcttcctcgccatgcacggacatctagcgcgc
atgcgcggcgaggactcggaccgagtgcaaccccagtccgtcgcactcaaacctttcctc
aacaaactcttcctggcaaagactgccaggcaggatagtccgtatatcaacttagatggg
gctgacccgacaccaccaagagaccacgtgttccacctcgtcttccccaaggagtggcag
aggagtgatctctcacaactgtttagtcccttcggggcagtcacagtctactttttagac
gaatgctcagccttcgtcggcttggatcagcgcgaccaggcatctgacgttatgcgagtc
ctctccaagaacaaccgcgtcactctcaccccctaccacaagtacaagagcggaggcagc
gggggagacactgagatggcgttacggagcgagcggaaatcggatacgtataaattaata
aacaaggctgacgcgaaatctcggcaagggttgagcaagagcaaccttgccggtctgagg
acgtcgctccaggtaccgcagttgccccgatcgcccaagtctccgatgtcaccacaaccg
acacagcagcggcacaaagtcaaccggacacgttcgaacagcgcttcgttgacaacgcaa
cccgtttccacgagaaaaaggacttcttctggcgttttccacgttgacggttcggaacca
gtggccaagaagtccatctctccgcctctacccgacaagactacaaacggccgcgacaag
actgataccggagatactgggaaacaagacgatgatgctgttaagaaaaaagatagttcg
gataagaaaaaaactggttcagaaaagaaaaaagataaagcggaaaagaaaaaggataat
gtagagaaaaaagataaaatagttgaaaagttcgacagcaaagctatgtcggattgtgtg
actgctttcaaggaaagcgacagttgggactga
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