Shewanella livingstonensis: EGC82_03830
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Entry
EGC82_03830 CDS
T05875
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
slj
Shewanella livingstonensis
Pathway
slj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EGC82_03830 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slj03019
]
EGC82_03830 (rhlB)
Enzymes [BR:
slj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EGC82_03830 (rhlB)
Messenger RNA biogenesis [BR:
slj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EGC82_03830 (rhlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AZG71966
UniProt:
A0A3G8LQS6
LinkDB
All DBs
Position
871914..873218
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AA seq
434 aa
AA seq
DB search
MSQTHLSTQKFADFPLKPEVLAALNENGFEFCTPIQALSLPILINAKDIAGQAQTGTGKT
MAFLVATFNHLLTVAAPEGRKATEPRAIIMAPTRELAIQIAKDAKLLAAHTGLKVGIVYG
GESYETQRAVLDQGVDILIGTTGRIIDYVRQGVISLSHIQAVVLDEADRMFDLGFIKDIR
FLFRRMPDAKSRLNMLFSATLSMKVQELAYDHMNDPEKVEIEPLEKTSKNIKEEIFYPSM
EDKMRLLLSLIEEDWPEKAIVFSNTKHSCEKLWSYLEGDGHRVGLLTGDVPQKKRIRILE
QFTSGDIDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRVGQKGVSVSFA
CEEYALNLPEIETYINHSIPVSNYDRDALLDDIPPPARIHRKPPTSRTRDGGAKGAHRSG
GNTSRPPRHRTRRP
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atgagccaaacacatttatcgacccagaaattcgccgacttcccgttaaagcccgaagta
ttagcggcattaaacgagaacggctttgagttttgcacgccaatacaggcgttatcatta
cccattttaattaatgcaaaagatattgccggacaagcccaaaccggtacaggtaaaacc
atggcctttttagtggccacgtttaaccacttattaaccgttgctgcaccagagggtcgc
aaagcaactgaacctcgcgctattattatggcgccaacacgtgagttagcaatccaaatt
gctaaagatgctaaattattagcagcacacacagggttaaaagtcggtattgtttacggc
ggcgaaagctatgaaactcaacgtgctgtattagatcaaggcgttgatatcttaattggt
accaccggacgtattattgattacgtccgccaaggtgtcattagtttaagccatattcaa
gccgtagtgcttgatgaagctgatcgtatgtttgatcttggttttattaaagacattcgc
tttttattccgcagaatgcctgatgccaagtcacgcttgaacatgctgttttctgctacg
ctttcaatgaaagtgcaggaattagcttatgatcatatgaacgaccctgaaaaagttgaa
atcgaaccgttagaaaaaacctctaaaaatattaaagaggaaattttttatccgtcgatg
gaagataagatgcgtttattactgagcttaatcgaagaagattggccagaaaaagcgatt
gtgttttcgaacaccaaacacagctgtgaaaagttgtggtcttatttagagggtgacgga
catcgagtggggttgttaaccggcgatgtaccacaaaagaagcgtattcgtattcttgag
caatttacctcaggtgacatagatattttagtggcaacagatgtggctgcgcgtggatta
catatttctgatgtatcacacgtatataactatgatttaccagatgattgtgaagattat
gttcatcgtattggccgtactggtcgcgtgggacaaaaaggtgtttcagtcagctttgct
tgcgaagaatatgcactgaatttacctgaaattgaaacttatattaatcattcaattcct
gtttctaactatgaccgtgatgcactattagatgatattccgcctccggcacgtatccat
cgtaagcctccaacatctcgtactcgtgatggtggagctaaaggtgcgcatcgtagtggt
ggtaatacttcgcgtccgccacgtcataggacccgtagaccatag
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