Shewanella livingstonensis: EGC82_04885
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Entry
EGC82_04885 CDS
T05875
Symbol
dbpA
Name
(GenBank) ATP-dependent RNA helicase DbpA
KO
K05591
ATP-dependent RNA helicase DbpA [EC:
5.6.2.6
]
Organism
slj
Shewanella livingstonensis
Brite
KEGG Orthology (KO) [BR:
slj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
slj03009
]
EGC82_04885 (dbpA)
Enzymes [BR:
slj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
EGC82_04885 (dbpA)
Ribosome biogenesis [BR:
slj03009
]
Prokaryotic type
rRNA helicases
EGC82_04885 (dbpA)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
AAA_19
Helicase_C_2
CMS1
Motif
Other DBs
NCBI-ProteinID:
AZG72157
UniProt:
A0A3G8LRV6
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All DBs
Position
1118245..1119648
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AA seq
467 aa
AA seq
DB search
MSQSTEQVVSSAFASLNLKPELLENLQTMGFESMTQIQAESLPPILAGEDVIGQAMTGSG
KTAAFGLGLLNKLDVKRFRIQTMVLCPTRELADQVAKDIRTLARGIHNVKVLTLCGGVPM
GPQVGSLEHGAHIIVGTPGRIVDHLDRNRLDLSNMNMLILDEADRMLEMGFQQHIDQIIA
AAPRERQTLLFSATFPDQIQAIADQILYKPVMVKVEAKHDNLTIDQHFYRIEDNQGRLEA
LRLLLLDKQPESAVVFCNTKRETQQVADSLHEFGFSVLALHGDLEQRDRDQMLLQFANRS
ARILVATDVAARGLDIDELDAVFNYHIAYDTEVHIHRIGRTGRAGSSGAAYTFFGEEDGY
KMAMIEEAMNKDVVSEPLPPMSALNKQPLAAEMITIQIEAGKKQKIRPGDIVGALTGGNG
LDFNDIGKIKVTDFRAYFAVKSNVSKQAMNIISKGKLKGRSYRAWFM
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
ttgagtcagtctacagaacaagtcgttagctcggctttcgcatcacttaatttaaaacct
gaattgcttgaaaacctccaaactatgggttttgaatcgatgactcagatccaagctgaa
agcttaccgcctattttggctggtgaagatgttattggccaagcgatgacggggtctggt
aaaacggctgcctttggtttaggtttgctcaataaactggatgtaaaacgttttcgcatt
caaactatggtgctatgtccaacgcgtgagttagccgaccaggtagcgaaagatattcgt
accttagcccgtggtattcataacgttaaagtactaacactttgtggcggcgtaccaatg
ggaccgcaagttggctcattagagcacggtgcacacatcattgtcggtaccccaggtcgt
attgttgatcatttagatcgcaaccgtttagatttaagtaacatgaacatgctgatttta
gatgaagccgatcgcatgttagaaatgggcttccagcagcacattgaccaaattattgcc
gcagcacctcgtgaacgtcaaacgttactgtttagtgctacgttccctgatcagatccaa
gcgattgccgatcaaattctgtataaaccggtaatggttaaagttgaagctaaacacgat
aacctcactatcgatcagcatttttaccgtatcgaagataaccagggccgtcttgaagca
ttgcgtttattgttattagataagcagcctgaaagcgctgtggtgttttgcaataccaag
cgtgaaacccaacaagtggcagactcattacatgagtttggctttagcgtactagcatta
catggtgatttagagcagcgcgatcgcgatcaaatgttattgcagtttgctaaccgtagt
gcgcgtattttagttgctaccgacgtcgctgcacgtggtttggatattgatgagttagat
gcggtatttaactatcatattgcttacgatactgaagtgcatattcaccgtatcggccgt
actggccgcgcgggcagttctggagccgcatatactttctttggtgaagaagacggttac
aaaatggcgatgattgaagaagccatgaacaaagatgtagtgagtgagcctttaccgcca
atgagtgcgctaaacaaacaaccgcttgctgctgaaatgatcacgattcagattgaggcg
ggtaaaaagcaaaaaatccgtccaggtgacattgttggtgcattaacgggtggcaatggt
ttagattttaacgatattggtaaaattaaagtgactgattttcgcgcttactttgccgta
aaaagtaatgtgtctaaacaagcgatgaatatcattagtaaaggtaagttaaaaggccgt
agctatcgtgcttggtttatgtaa
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