Shewanella livingstonensis: EGC82_05540
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Entry
EGC82_05540 CDS
T05875
Name
(GenBank) cryptochrome/photolyase family protein
KO
K06876
(6-4)DNA photolyase [EC:
4.1.99.13
]
Organism
slj
Shewanella livingstonensis
Brite
KEGG Orthology (KO) [BR:
slj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
slj03400
]
EGC82_05540
Enzymes [BR:
slj01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.13 (6-4)DNA photolyase
EGC82_05540
DNA repair and recombination proteins [BR:
slj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
Direct repair
EGC82_05540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DPRP
Motif
Other DBs
NCBI-ProteinID:
AZG72279
UniProt:
A0A3G8LRV0
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All DBs
Position
complement(1275956..1277542)
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AA seq
528 aa
AA seq
DB search
MITVFNTISASLSPQTQTLRLILGDQLNASHSWFKQIDPTVVYVIAELKQETGYVNHHVQ
KVCAFFAAMAQFAQALAQCGHQVMYLTLDETQHYADLPQLLEYITKEHKLTHFQYQQPDE
YRLSQQLSSVVLPGIAINGTDSEHFLLPFSDIQREFTPKKHVKMEFFYRRMRKRFNVLMQ
DGEPFGGQWNFDQQNRASIKKNDLADIPSPLLFANDVSDILVRLKRHNINTIGKAESQLL
WPVNRLQSRKLLDYFCQHLLIRFGHFQDAMTENSRSDWSLYHSRLSFALNAKIISPSEVI
NKVIAHWQAHQDDISLAQVEGFVRQILGWREYVRGIYWINMPDYATQNALQAQRPLPGYF
WTANTKMSCMHHTIKQSLDFAYAHHIQRLMVTGCFSLLAGINPDEVDQWYLGIYIDAIEW
VEMPNTRGMTQFADGGIVATKPYAASGNYLNKMSDHCKNCHYNVKLKTEENACPFNSLYW
HFIQRHQAQFGRNPRMTMVYKNWQKMDTGTQQAIINKAEALLANLDNL
NT seq
1587 nt
NT seq
+upstream
nt +downstream
nt
atgataaccgtttttaacactatttcggcgtcactatcgccacaaacacaaaccttacgc
ctcattttgggcgatcaactcaatgcctcgcacagttggtttaaacaaatcgatccgact
gtggtgtatgtgattgctgagctaaagcaagaaaccggttacgttaaccatcatgtacaa
aaagtgtgtgccttttttgccgccatggcgcaatttgctcaagctttagcgcaatgcggt
catcaggttatgtacctgaccttagatgaaacccagcattatgccgacctgccacagtta
cttgaatacattaccaaagagcacaaattaactcattttcaataccaacaacctgatgag
tatcgattatcacagcagttaagctcagttgtactgcctggtattgcgatcaacggcacc
gacagtgaacattttttactgccttttagtgatattcaacgcgaattcaccccgaaaaaa
cacgttaaaatggagtttttttatcgccgtatgcgtaaacgctttaatgtgttgatgcaa
gatggtgaaccttttggtggtcagtggaattttgatcagcaaaaccgggcgagtataaaa
aagaatgatttggccgatattccttcgccattactgtttgccaacgatgtcagtgatatt
ttagtccgacttaaacggcacaatatcaacaccattggcaaagcagaaagccaattatta
tggccagttaatcgacttcaatcccgtaagttactcgactatttttgccagcacttattg
atccgttttggccattttcaagatgcgatgaccgaaaatagtcgttccgattggagccta
tatcattcaaggctatcgtttgcgcttaacgccaaaattatttcccctagcgaagtgatt
aataaagtcattgcccactggcaagcgcatcaagatgatatttctttggcacaagtagaa
ggttttgtacgacaaatattaggttggcgcgaatatgtccgcgggatttattggatcaat
atgcccgactacgccactcaaaatgctttgcaagcgcaaagaccgctaccagggtatttt
tggaccgcaaacaccaagatgagctgcatgcaccacaccattaagcagtcactcgacttt
gcctatgcgcaccatattcaacggttaatggttaccggttgttttagtttactcgcaggt
atcaaccctgatgaggtcgaccaatggtatttgggcatttacattgatgccatcgaatgg
gtcgaaatgcccaacacccgtggcatgacccaatttgccgacggcggtattgtcgccact
aaaccttatgccgccagtggtaattatttaaataaaatgagcgaccattgcaaaaactgc
cattacaatgtcaaactcaaaacagaagaaaatgcctgcccgtttaacagcttatattgg
cattttattcaacgccatcaagcgcaatttggccgtaatccgcgcatgacgatggtatat
aaaaattggcaaaagatggatactggcactcaacaagccattatcaataaagccgaagcg
ctgttagcaaacctcgacaacttataa
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