Shewanella livingstonensis: EGC82_08460
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Entry
EGC82_08460 CDS
T05875
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
slj
Shewanella livingstonensis
Pathway
slj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
slj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
EGC82_08460 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
slj03400
]
EGC82_08460 (recD)
Enzymes [BR:
slj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
EGC82_08460 (recD)
DNA repair and recombination proteins [BR:
slj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
EGC82_08460 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
Viral_helicase1
UvrD_C_2
Helicase_RecD
AAA_11
SH3_13
AAA_22
UvrD-helicase
UvrD_C
SLFN-g3_helicase
AAA_16
nSTAND3
T2SSE
TraI_hel_assoc_N
AAA_25
AAA_28
FtsK_SpoIIIE
AAA_24
DEAD
NTPase_1
AAA_12
ResIII
SRP54
TetR_C_29
NPHP3_N
Motif
Other DBs
NCBI-ProteinID:
AZG72795
UniProt:
A0A3G8LU87
LinkDB
All DBs
Position
complement(1946101..1948164)
Genome browser
AA seq
687 aa
AA seq
DB search
MLMLTYPITELLQLWQQQRLITALDRHFALELANIETINNDPSITEAQSQLFLLVCALLS
QQLSNQHSCLVIEQIDLTNPMAEDSHRHAEVNCCITLNHQQLIEQICLFDAVGQPGDNTP
MIFEHGRLYLNKYHFFETQVASKLTHLAHKPLENELTHSNLPQLIECLFTAQDNNNSPFN
WQKIATAIALAKALAVITGGPGTGKTTTVTKLLLLLLTQSPLTIRLVAPTGKAAARLSES
IKASKHRLLQQLTQVSDPALAQILINSLKKIPEDASTLHRLLGVIPNSHQFRHHQDNPLR
LDLLVVDEASMVDLPMMYKLLSALPSHGRLILLGDQDQLASVEAGAVLADICVGLKQANL
QQTSPWSMRYSAAQAKLIEQLTQQDVSQFIDQQPKIGDSLCMLMHSHRFKGDAGIGLLAS
AVNQSNISAIRQVWLQQHAELDWFEHQLNAQGDNSGKQALLALSVQAYGEYLSLVQENQQ
GINQQTIIDQADRQDCAITLPHSEQTIIDSFNQYRVLCAMRAGEFGVEGMNIAITDSLKH
AKLINPHNEFYLGRPIIIQSNDYNLGLFNGDIGLILQDNTKPSRLMAHFVMADGSLLKVL
PARLPSHDTCYAMTVHKSQGSEFDKVSFVLPHKPSPAQWQLLSKELLYTAITRAKNHFYC
LGTNMVFEKASKQATSRASGLAWRLWG
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atgttaatgctcacctacccgatcaccgaattactccagctttggcaacaacagcgactc
attaccgcgctcgatcgccattttgctttagagctggctaacattgaaaccattaataac
gacccaagcatcaccgaagcacaatctcagctttttttactggtttgcgccctgctcagt
cagcaattgtcgaatcagcacagttgtttagtcatcgaacaaattgatctcaccaatccc
atggcagaagacagccatcgtcacgctgaggtcaattgttgtatcacactcaaccatcaa
cagttgatagagcaaatttgtttatttgatgcagtgggtcaaccgggtgacaacactccg
atgatttttgaacatgggcgtttatatttaaataagtaccatttttttgaaactcaagtc
gcgagtaagttaacccatctagcacataaaccgcttgaaaacgagttaactcacagtaat
ttaccgcaactgatcgagtgcttatttaccgcacaagacaacaataatagtccgtttaac
tggcaaaaaattgccactgctatcgcattagccaaagcattagcggtaataactggcggc
ccaggaaccggtaaaaccaccacagtaaccaagctattattgttactgttaacccaatcg
ccgctaaccatccgtttagtcgcgcctaccggtaaagcagcagcaaggctgagtgaatct
atcaaggcgtctaaacatcgtttactgcaacagctaactcaagtcagcgacccagcactg
gcgcagatattgatcaattcactaaaaaaaattcctgaagacgcttctacattgcatagg
ctgttgggcgtcatccccaattcgcatcaatttagacaccatcaagataatccactgcga
ctagatttactggtggtcgatgaagcgtcgatggtcgacttacccatgatgtacaaatta
ctcagcgccctgccgtctcatggacgtttgatattgttaggcgaccaagatcaactcgca
tccgtagaagctggcgcagtactggccgatatttgtgttggcttgaagcaagccaacctg
caacagacatcgccatggtcaatgcgttacagcgcagcacaggcaaagctcattgagcaa
ttaacccaacaagatgtcagtcagtttattgatcaacagcctaaaattggtgacagtttg
tgtatgttgatgcacagccatcgttttaaaggtgatgcaggtattggcctattagccagt
gcggttaatcaatctaatatcagtgccattcgccaagtatggctgcaacagcatgctgaa
ttagactggtttgaacatcagcttaatgcccaaggagataacagcggtaaacaagcgtta
ttggcattatcggtacaggcttatggtgagtatctgagtttggtacaagaaaatcagcaa
gggataaatcaacagaccattatcgatcaagcggatcgacaggactgcgccataacattg
ccgcattctgaacaaaccatcatcgacagctttaaccaatatcgagtcttgtgtgccatg
cgagcaggtgaatttggggttgagggcatgaacatcgccatcaccgacagccttaaacac
gccaaactgattaatccccataatgagttctatttaggccgaccgatcattattcaaagt
aacgattacaacctaggcttatttaatggtgatattgggttaatcttgcaagacaacact
aagccaagtcgcttaatggcccactttgttatggccgatggcagcctgctcaaagtatta
cccgcacgcttacccagccacgacacttgctacgccatgacagtacacaaaagccaaggc
agcgagtttgataaagtcagctttgtattgccccacaaacccagccccgcacaatggcag
ctactcagtaaagaactgctttacaccgccatcacccgcgccaaaaaccatttctactgt
ttaggcactaacatggtatttgaaaaagccagcaaacaagccacatcgcgagcatcaggt
ttagcttggagattatggggttga
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