Shewanella livingstonensis: EGC82_08465
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Entry
EGC82_08465 CDS
T05875
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
slj
Shewanella livingstonensis
Pathway
slj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
slj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
EGC82_08465
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
slj03400
]
EGC82_08465
Enzymes [BR:
slj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
EGC82_08465
DNA repair and recombination proteins [BR:
slj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
EGC82_08465
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
AAA_11
AAA_25
AAA_30
ResIII
DUF7134
Motif
Other DBs
NCBI-ProteinID:
AZG72796
UniProt:
A0A3G8LT63
LinkDB
All DBs
Position
complement(1948158..1952024)
Genome browser
AA seq
1288 aa
AA seq
DB search
MDAITVTPLNALTLPFRGSSLIEASAGTGKTYTISGLYLRLLLGHGGKAPLSCEQILVVT
FTNAATEELRDRIRKRINLAFKRFLGLAVNDEFIEQLYHDTSEDERPIALRRLDLALKSL
DEAAIFTIHAFCQRVLSDMAFESSLLFESEFTLDDSEFLHHAVRDFWREVCYPLPPFLAQ
AISDVFAEPDVLAQKLRPLLGASQAVLSKQPPAFETLQQQLSQSISRFSLLWQSLHDSTL
ELLQSLPLNGQRFGKGTDGYPKLSQLFDSISNWVKFGQGLPPIKAMEQLALSELKLNKGG
VIPSADEAPLLDHIERLLELINQLIPSFLVRAREGIRQRFAGQKQQRNLMTPDDLLLSLA
MALSQNPITLAHAIAKRFPVALIDEFQDTDPLQFTIFNQVYQQPLASQLGLTADTRVNSP
DDDSISNDDISNDNNNDDANKGRLSLLMIGDPKQAIYAFRGADIYTYIAARQQTQAHYNL
DTNYRSSTQLVNGVNQLFSQHQDPFISQAIPYDIVKTPSSAANKHLSEATTNPAALRIRL
LAEDDVNGLNKTTARQRLAADAASEIKRLLTESQQGLCNVHSSQSQPSKPLIAKDIAILV
RDRNEAAVMKAALSARKIGAVFLSRDSVFNTIEAREMAILLYALATPKDERAIRAALATE
LVGFNALRIHQFNQDEEQRQRVLDQFTHWHQLWQQRGVMPALLNFASETQLIHRYLSQSV
TTDINNVDNSNANALRGNDNNSDSSYSSNSDNSVNDADEDNAADAKASGERRLTDFRHLA
ELLQQKATELDGNSALINWYEQQLIGNNGGDEQQLRLESEQNLVQIVTIHKSKGLEYPVC
FVPFVSLARGHKKRPAPMMYHKNEQLIWDIDATDEGWEQLKQETLAEDLRLLYVALTRPV
YVCYLYIANQSRQLKAGISSQLHETGIGYLLGITDKKADFNLIQAKVNAIATLPAISVEC
LSNDIDDSVLADIHDNNDPLAAKIVTRKKSLAWRVGSYSGLVKHLPHERVAPGADDEDFT
DELIQLQLQDDVLTEPVLDRFSFERGANTGSFMHLVLELFDFTQADTELSPALAKAMKQY
GFDETLWQQPLMDWYQQILAAPLFIEPSSQDTSLTLSQLGIKQKMVEMEFYLPISTLQAS
QLNHILQQHGYVGGLDFDTLKGMLKGFIDLIFEHQGQFCIADYKSNHLGDKYSDYTRSAM
AKAINAHRYNLQYILYTLALHRYLSLRLPDYNYQQHIGGSYYLFLRGMHPEHPGAGVFYD
KPPQALIEQLDRLFSGQTDNRAPETSSC
NT seq
3867 nt
NT seq
+upstream
nt +downstream
nt
atggacgctattaccgtgacaccgcttaatgccctcaccttaccgtttcgcggttccagc
ttaattgaagccagtgctggtacggggaaaacctataccatttccggtttgtatttacgt
ttattgttaggccacggtggtaaagcgccgttaagttgtgagcaaattttggtggttacc
ttcaccaacgccgcaaccgaagaactcagagaccgaattcgtaagcggattaacttagcg
tttaaacgctttttaggcctagccgtaaacgatgaatttattgaacagctttaccatgac
acctcggaagatgaacgtcctattgcgttaagacgcttagacttagcgttaaaatcgtta
gatgaggcagctatttttaccattcatgccttttgccaacgcgtgttgtcagacatggca
tttgagtcgtcattgttatttgagtccgaattcaccctcgacgacagtgagtttttacac
catgcggtgcgcgatttctggcgtgaagtgtgttatccattaccgccctttttagcccaa
gccattagtgatgtgtttgccgaaccagacgtgttagcacaaaaactgcgaccgttatta
ggtgcaagccaagcggtgttatcaaaacaacctccagcctttgaaaccctacaacaacag
ctaagccaaagtatcagccgctttagcttattgtggcaaagcctgcacgacagcaccctt
gaattattgcaatcgctgccattaaacggtcaacgttttggtaaaggtaccgacggctac
cctaaacttagccaactgtttgatagcattagtaactgggtaaaatttggccaaggatta
ccgccaataaaagcgatggagcaactggcattatcagagcttaaactcaataaaggtggc
gttatccccagtgcggatgaagcgccgttactagaccatattgagcgtttattggagtta
attaatcagcttattccgtcatttttagtgcgcgcccgtgagggtattcgccaacgcttt
gccggccaaaaacagcaacgcaatttgatgacacccgatgacctattgctcagcttagcc
atggcgctcagccaaaacccgatcaccctcgcccatgctattgctaagcgttttccggtc
gcattaattgatgagttccaagacaccgacccactacaattcaccatttttaatcaggtg
tatcaacagccgctagcatcacaactgggcttaaccgcagatacaagggtgaacagccca
gatgatgacagtataagtaatgacgacattagtaatgacaacaacaatgatgacgctaac
aaggggcgcttaagtttattaatgattggcgatcctaagcaggctatttatgctttccgt
ggtgccgatatttatacttatattgctgcgcgccaacaaacacaggctcattataatctt
gacaccaattaccgctcatcaactcagttagtcaatggcgttaatcagctttttagccaa
caccaagacccgtttattagccaagctatcccctatgatattgttaaaaccccatcatcg
gcagccaataaacacctgagtgaagcgacaacaaatccagcagcgttgcggatccgctta
ttagccgaagacgatgttaatggcctcaataaaactaccgcaagacaacgcctggccgca
gatgctgccagtgaaataaagcgcttactcactgaatcacaacaagggttatgtaacgtt
cattctagccaaagccaaccgagtaagccgttaatcgctaaagacatcgccatattagtg
cgcgacagaaatgaagccgcggtaatgaaagcggcattatcggcccgtaaaattggcgcg
gtatttttaagccgagacagtgtgtttaacactattgaagctcgagaaatggcgattcta
ctatatgcgttagccacaccaaaagatgaacgcgctatccgcgccgcactggccactgag
ctagtcggttttaatgccctgcgcattcatcaatttaatcaagatgaagaacaacgtcag
cgggtactagatcaattcactcattggcatcagttatggcaacaacgcggcgtaatgcca
gcactgcttaactttgccagcgaaacccaattaatccaccgctatttgtcgcaatctgtc
acgaccgacattaataatgttgataacagcaatgctaatgctctgcgtgggaatgacaac
aatagtgacagctcttatagcagcaacagtgacaatagcgttaatgatgctgatgaagac
aacgccgcagatgccaaagcatcaggtgaaagacgcttaaccgactttaggcatttagct
gaattactacagcaaaaagccaccgaacttgatggcaacagcgcccttattaactggtat
gagcaacagctgattggtaataatggcggtgacgagcaacaactgcgcctagaaagcgaa
caaaacttggtgcaaattgtcactattcataaaagtaagggcttagaatatccggtatgt
tttgtgccgtttgtcagcctagcccgtggtcataaaaaacgcccggcaccaatgatgtac
cataaaaatgaacaacttatttgggacatcgacgccaccgacgaaggctgggaacaactc
aaacaagaaaccctcgctgaagatttacgcctgttatatgtggcgttaacccggccagtt
tatgtgtgttatttgtatattgccaaccaaagccgtcaattaaaggcggggatcagcagc
caattgcatgaaacaggtatcggttatctgctgggcattaccgacaaaaaagccgacttt
aacctaattcaagccaaagtgaatgctattgccaccttgccggcaataagtgtcgaatgc
ttaagcaacgatattgacgattccgtgctcgctgatatccacgataacaatgacccgcta
gcggccaaaatagtaactcggaaaaagagcctggcatggcgagtgggcagttattcaggc
ttagtcaaacatttgcctcacgagagagtcgcacccggtgctgacgatgaagacttcacc
gatgagttaatccaattacagttgcaagatgacgttctcaccgaacccgtactggatcgc
tttagtttcgagcgcggtgctaataccggtagttttatgcatttagtgctagaactgttt
gattttacccaagcagacaccgagctgtcaccagcactggccaaagccatgaaacaatat
ggttttgacgaaaccctatggcaacagccgctaatggactggtatcagcaaatattggcc
gcgccgctgtttatcgagccatcgtcacaagacacctcactgacattaagccaattaggc
atcaagcaaaaaatggtcgaaatggagttttacctgccgatttcaaccttacaagcatcg
caattaaatcatattttgcaacagcacggttatgtcggcggactcgactttgacacctta
aaaggcatgttaaaaggctttatcgatttaatctttgagcatcaaggccaattctgtatt
gccgactataagtccaaccatttgggcgataaatatagcgactacactcgctctgccatg
gccaaagccattaatgctcatcgttataatttacaatacatcttgtataccttggcattg
catcgctacttatcgcttagattaccagactataattatcagcaacatattggcggcagc
tattatctgtttttacgcggtatgcatcctgaacacccgggcgcgggggtattttatgac
aaaccaccgcaagcattaatcgaacaactcgaccgcttattttcaggtcaaacagacaat
cgtgcaccggagacgtcatcatgttaa
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integrated database retrieval system
