Shewanella livingstonensis: EGC82_17420
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Entry
EGC82_17420 CDS
T05875
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
slj
Shewanella livingstonensis
Pathway
slj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EGC82_17420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slj03019
]
EGC82_17420
Enzymes [BR:
slj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EGC82_17420
Messenger RNA biogenesis [BR:
slj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EGC82_17420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UvrD-helicase
SNF2-rel_dom
P-loop_SecA
AAA_19
Gag_p24
UTP25_NTPase-like
AAA_22
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
AZG74374
UniProt:
A0A3G8LY80
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All DBs
Position
4021005..4022306
Genome browser
AA seq
433 aa
AA seq
DB search
MKFESFSFAPEILRAIAECGYQSMTPIQQQAIPAIRRGEDVLASAQTGTGKTAAFALPIL
QRMCDNPKETMPSNTRTLILTPTRELAAQVADNITAYSKHLNLTVLTIYGGVKIETQSQK
LKRGADVIVATPGRLLEHIVACNLSLSNVEFLVLDEADRMLDMGFSADIKKILQAVNKKR
QNMLFSATFSTEVKKLANDMLDKPKVITVDKQNTAADTVSQVVYPVEQRRKRELISELIG
TKNWQQVLVFTATRDAADKLVKELNLDGIPSGVVHGEKAQGSRRRALREFVEGKIRVLVA
TEVAARGLDIKNLEYVVNYDLPFLAEDYVHRIGRTGRAGKTGVAISFVSREEERTLADIE
KLIGQQIRRITVPGYEVGSREVLLKQIEKRRSFAKKQQRGDNAGAQMIAEKNMDGRRVKV
GKVSSTVKYKKIK
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atgaaattcgaatcttttagcttcgccccagaaatattacgcgcgatcgctgagtgcggt
tatcaatctatgacgccaattcaacaacaagcgatcccagcaatccgtcgtggtgaagac
gtcctagctagcgctcaaacaggtaccggtaaaactgcagcatttgcattgcctatatta
caaagaatgtgcgacaacccaaaagagacgatgccgtctaatactcgcactttaattctt
acgcctacccgtgagctagcagcgcaagttgccgacaacattactgcttacagtaaacac
ctcaacttaaccgtattaaccatttatggtggcgttaaaattgagactcagtcgcagaaa
cttaaacgcggtgctgacgttattgtggcaacgcctgggcgtttacttgaacacatagtg
gcatgtaatttaagtttgtctaatgttgagtttttagtccttgatgaagccgatcgtatg
cttgatatgggctttagtgccgatattaaaaagatccttcaagcagtaaacaaaaagcgt
caaaacatgttgttctcagcgaccttctctactgaggttaaaaagctggccaatgacatg
cttgataagcctaaagtgattacggttgataaacaaaatactgctgctgacaccgttagt
caggtggtgtatccggttgaacagcgtcgtaagcgtgaattaatatctgagcttattggt
accaaaaactggcaacaagtattggtgttcactgcgactcgtgacgctgcagataaatta
gttaaagagctgaacttagatggtattccatcaggtgtcgttcatggcgagaaagcacaa
ggcagccgtcgtcgtgcactgcgtgaattcgttgaaggcaaaattcgcgtattagtggct
accgaagttgctgctcgtggtcttgatattaaaaatcttgaatacgttgttaactatgac
ctaccctttttagctgaagattatgtccatcgtattggccgtaccggtcgtgcgggtaaa
accggcgtcgcgatatcatttgtgagccgtgaagaagaacgtactctagcggatatcgaa
aaactcatcggccaacaaattcgtcgtatcacagtacctggttatgaagttggtagccga
gaagtactgcttaagcaaattgaaaagcgtcgtagctttgccaaaaaacaacaacgcggc
gataacgctggcgcgcaaatgattgctgagaaaaacatggatggtcgtcgtgttaaagtc
ggtaaagtaagcagcacagtaaaatacaaaaagattaaataa
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