Streptomyces lunaelactis: SLUN_13205
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Entry
SLUN_13205 CDS
T06347
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
slk
Streptomyces lunaelactis
Pathway
slk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SLUN_13205
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slk03019
]
SLUN_13205
03009 Ribosome biogenesis [BR:
slk03009
]
SLUN_13205
Enzymes [BR:
slk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
SLUN_13205
Messenger RNA biogenesis [BR:
slk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SLUN_13205
Ribosome biogenesis [BR:
slk03009
]
Prokaryotic type
rRNA processing factors
SLUN_13205
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
AVZ73007
UniProt:
A0A2R4T1T1
LinkDB
All DBs
Position
complement(2919321..2923265)
Genome browser
AA seq
1314 aa
AA seq
DB search
MLEPKDSGTAGETENNSPSDTLPPRRRRRAASRPAGPPSAAAGTAGVPADVTETTEAAEP
LAPAAVAVESTESAEPEAEAVAPRARRRATRKATAPSGAPQSADADEIAVADEAAAEPEA
EAAAPRARRRATRKATAPSGAPQSADADETVVADEVAAEPEAEAAAPRARRRATRKVAAP
EPVESTEAPAAEDETPAEAPAPRGRARRRASAPAGAPQAAEAESTQSVEAAEPETEAAAP
RSRRRATRKVTAPAAAPQAVEADEAVAETGERLPTGAVAQITADEAEVAAAERAATRGRT
RRRAVSPEFTAQPEKAARADKGEQAEKSEAPARGRRAARPAVAVFQAPVFAEPMFQTPET
AAAAAAAAVEEPEEDEELVEPVAETPAAPEPAGRRRRRRRGEPAEPVEAPAPVAQEAEPE
AETEPEAEQPAEGEESDEFEDRPSRRRRRGGRRRRRGEPADADETSEEQADEAAAEDTQD
TQDEEDEEDEHETPSAAGTSSSRRRRRRRRRSGESGPEEEPGASDPERTVVKVREPRPAR
EKPEPSDEVQSIKGSTRLEAKKQRRREGREQGRRRVPIITEAEFLARREAVERVMVVRQN
GERTQIGVLEDNVLVEHYVNKEQATSYVGNVYLGKVQNVLPSMEAAFVDIGKGRNAVLYA
GEVNFEALGMANGPRRIEVALKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEG
SMTGISRKLPDTERARLKTILKKIVPEDAGVIVRTAAEGASEDELRRDVERLQGQWEDIQ
KKAKSGGSSNAPALLYGEPDMTVRVVRDIFNEDFSKVIVSGDEAWETIHGYVGHVAPDLT
DRLNRWTSEVDVFATYRIDEQLMKALDRKVWLPSGGSLVIDKTEAMVVVDVNTGKFTGQG
GNLEETVTRNNLEAAEEIVRQLRLRDLGGIVVVDFIDMVLESNRDLVMRRLLECLGRDRT
KHQVAEVTSLGLVQMTRKRVGQGLLESFSETCVHCNGRGVIVHMEQPTTAGGGGGGKRAK
KRGRGGAAGTDHVHEHEQAEDLAEAETEAEVAAEVAAPVALAEPEFVPDEELYSSAAEAE
AAATRGRGRRRATRKATAPAGAPKAAEVRAEEPRAEEPKAEAPAPAAEPETPAEEAAPTG
RGRRRATRKATAPAGSPASSTPAVAEITVPETAAGPEAAKAEAPVAAPAAEEAPVAAPPR
ARRRVTRKVTAPAGSPSGAEEAAVVVVAASTESEPKADSEVASEPQPEETEGAAPAKKAA
RKTAKKATAKKAAAKKTTAKKAVAKKTTAKKASAKKTAAADQQTPPSVSASTDG
NT seq
3945 nt
NT seq
+upstream
nt +downstream
nt
atgctcgagccgaaggattccggcaccgccggagagaccgagaacaactcgcccagcgac
acgctgcccccgcgccgcaggcgcagggccgcgtcgcgtcccgcagggccgccgagcgcg
gccgcgggtacggccggcgtccccgctgacgtcaccgaaaccaccgaagcagccgagccc
ctcgcgccggccgccgtggccgtggagagcacggagtccgccgagccggaggccgaggcc
gtcgcgccgcgtgcccgtcgccgtgcgacccgtaaggcgaccgcgccctctggtgcgccg
cagtcggcggatgccgacgagatcgctgttgccgatgaggccgctgccgagccggaggcc
gaggccgccgcgccgcgtgcccgtcgccgtgccacccgtaaggcgaccgcgccctctggt
gcgccgcagtcggcggatgccgacgagaccgttgttgccgatgaggttgccgctgagccg
gaggccgaggccgccgcgccgcgtgcccgtcgccgtgccacccgcaaggtggccgccccc
gagccggtcgagtccaccgaggctcccgccgccgaggacgagaccccggccgaggccccc
gcaccgcgtggtcgtgcccgccgcagggcgtccgcgcccgccggtgcgccgcaggcagcc
gaggccgagagcacgcagagcgtggaggccgccgagccggagaccgaggccgccgcgccg
cgttcccgccgtcgcgccacccgcaaggtcaccgcgcccgccgccgcgccccaggccgtc
gaggccgacgaggccgtcgccgagacgggcgagcgcctgcccaccggcgccgtcgcgcag
atcaccgccgacgaggccgaggtcgcggccgccgagagggcggcgacccggggccgtacg
cgccgccgcgccgtctcgcccgagttcaccgctcagccggagaaggccgcgagggccgac
aagggcgagcaggccgagaagagcgaggcgcccgcgcgcggccgccgtgccgcacggccc
gccgtggccgtcttccaggcgcccgtcttcgccgagccgatgttccagaccccggagacg
gccgctgcggctgccgccgctgcggtggaggagccggaggaggacgaggagctcgtcgag
cccgtcgccgagacccccgccgcccccgagcccgccgggcgtcgccgtcgccgccgccgt
ggtgagccggcagagcccgtcgaggctcccgctccggtggcccaggaggccgagcccgag
gcggagaccgagcccgaggcggagcagcccgccgagggcgaggagtcggacgagttcgag
gaccgtccgtcgcgccgccgccgccgtggtggccgccgccgtcgccgtggcgagcctgcc
gacgccgacgagacctcggaggagcaggccgacgaggccgccgccgaggacacgcaggac
acgcaggacgaggaggacgaggaggacgagcacgagaccccctcggccgccggcaccagc
agcagccgtcgccggcgccgccgtcgccgtcgcagcggtgagtccgggcccgaggaggag
ccgggtgcgagcgacccggagcgcacggtcgtcaaggtccgcgagccccgcccggcccgc
gagaagcccgagccgtccgacgaggtgcagtccatcaagggctcgacccgtctggaggcg
aagaagcagcgccgccgcgagggccgcgagcagggccgccgccgcgtgccgatcatcacg
gaggccgagttcctggcccgccgtgaggccgtcgagcgtgtgatggtcgtccggcagaac
ggcgagcgcacccagatcggtgtcctcgaggacaacgtgctcgtcgagcactacgtcaac
aaggagcaggcgacttcgtacgtcggcaatgtctacctgggcaaggtgcagaacgtactg
ccgtccatggaggccgcctttgtggacatcggcaaggggcgcaacgccgtcctgtacgcc
ggtgaggtcaacttcgaggcgctgggcatggccaacggcccgcgccgtatcgaggtcgcg
ctcaagtccggccagtcggtcctcgtccaggtgaccaaggacccgatcggccacaagggc
gcccgcctcaccagccaggtctcgcttcccggccgctacctcgtctacgtgcccgagggc
tcgatgaccggtatcagccgcaagctgcccgacaccgagcgcgcacggctgaagaccatc
ctcaagaagatcgtccccgaggacgcgggcgtcatcgtccgtaccgccgcggagggcgcc
agcgaggacgagctgcgccgcgatgtcgagcggctgcaggggcagtgggaggacatccag
aagaaggccaagagcggcggcagctcgaacgcgcccgcgctgctctacggggagccggac
atgaccgtccgggtcgtccgcgacatcttcaacgaggacttctcgaaggtcatcgtcagc
ggtgacgaggcgtgggagaccatccacggatacgtcggtcacgtcgcccccgacctgaca
gaccggctgaacaggtggacctccgaggtcgacgtcttcgccacctaccggatcgacgag
cagctgatgaaggcgctggaccgcaaggtctggctgccgagcggcggctcgctggtgatc
gacaagaccgaggccatggtcgtggtcgacgtcaacaccgggaagttcaccggccagggc
ggcaacctcgaggagaccgtcaccaggaacaacctggaggcggccgaggagattgtgcgt
cagctgcggctgcgcgacctcggcggcatcgtcgtcgtcgacttcatcgacatggtgctc
gagtccaaccgcgatctggtcatgcggcggctgctcgagtgcctcggccgggaccgtacg
aagcaccaggtggccgaggtcacctcgctcggcctggtccagatgacccgtaagcgggtg
ggccagggtctgctggagtccttctccgagacctgtgtccactgcaacggccgtggcgtg
atcgtgcacatggagcagccgaccaccgccggtggcggtggcggcggcaagcgcgccaag
aagcgcggccgcggcggtgcggccggtacggaccacgtccacgagcacgagcaggcggag
gacctggcggaggccgagaccgaggcggaggtcgccgccgaggtggccgccccggttgcg
ttggccgagcccgagttcgtccccgacgaggagctgtacagcagcgccgccgaggcggag
gcggccgctacccgcggtcgtggccgccggcgggcgacccgtaaggcgacggccccggcc
ggtgcgccgaaggccgcagaggtcagggccgaggagcccagggccgaggagccgaaggcc
gaggccccggccccggccgccgagccggagacgcccgcggaggaggcggccccgacgggc
cgtggccgccgtcgggccacccgcaaggcgacggctccggccggctcccccgcgtcctcg
acgccggcggtcgccgagatcacggtgccggagaccgccgccgggcccgaggccgccaag
gccgaggcgcccgtcgcggcccccgccgccgaggaggcgcccgtcgcggcgccgccgcgt
gcgcgccgccgggtgacccgtaaggtcaccgctccggccggttcgccctcaggcgcggag
gaggccgcggtcgtcgtggtcgccgcctcgaccgagtccgagccgaaggccgattccgag
gtcgcatccgagccgcagccggaagagaccgagggtgctgctccggccaagaaggcggcc
cgcaagaccgccaagaaggccaccgcgaagaaggccgcggccaagaagacgacggccaag
aaggccgtggcgaagaagacgacggccaagaaggcttccgcgaagaagaccgcggccgcc
gatcagcagactccgccctcggtgtcggcgtcaaccgacggctga
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