Streptomyces lunaelactis: SLUN_16040
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Entry
SLUN_16040 CDS
T06347
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
slk
Streptomyces lunaelactis
Pathway
slk03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
slk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SLUN_16040 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
slk03400
]
SLUN_16040 (mfd)
Enzymes [BR:
slk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SLUN_16040 (mfd)
DNA repair and recombination proteins [BR:
slk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SLUN_16040 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
AAA_22
UB2H
MFD_D3
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AVZ73463
UniProt:
A0A2R4T2U1
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Position
complement(3576386..3579916)
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AA seq
1176 aa
AA seq
DB search
MSLHGLLDAVVRDPALAEAVKAAADGHRMHVDLVGPPAARPFAVAALAREASRPVLAVTA
TGREAEDLAAALRSLLPEEGIAEYPSWETLPHERLSPRSDTVGRRLAVLRRLAHPTDDDP
ATGPVSVVVAPIRSVLQPQVKGLGDLEPVALRTGQRADLNEIVDSLAAAAYSRVELVEKR
GEFAVRGGILDVFPPTEEHPLRVEFWGDDVEEIRYFKVADQRSLEVAEHGLWAAPCRELL
LTEDVRQRAAALAELHPELGELLGKIAEGIAVEGMESLAPVLVDDMELLLDVLPKGSMAV
VCDPERVRRRAADLVATSQEFLQASWAATAGGGEAPIDVGAASLRGIADVRDRARELGMM
WWSVSPFAADEELSDDTLKLGMHAPETYRGDTARALADTKGWLADGWRTVYVTEAHGPAA
RTVEVLGGEGIAARLDRDLDEISPSVVHVTCSSIDYGFVDPGLKLAVLTETDLSGQKAAG
KDGQRMPTRRRKTIDPLTLEAGDYIVHEQHGVGRYIEMVQRTVQNATREYLLVEYAPAKR
GQPGDRLYIPTDQLEQVTKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIKLYSA
RMAAPGHAFGPDSPWQRELEDAFPYVETPDQLSTIAEVKEDMEKTVPMDRLVCGDVGYGK
TEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFGTFSERYSQFPVNVRALSRFQSDTEAKA
TLEGLRDGTVDIVIGTHRLFSAETKFKDLGLVVVDEEQRFGVEHKEQLKKLRANVDVLTM
SATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEEKQLGAAIRRELLREGQVFY
IHNRVESIDRAAARLREIVPEARIATAHGQMPESALEQVVVDFWEKKFDVLVSTTIVESG
IDISNANTLIVERGDNFGLSQLHQLRGRVGRGRDRGYAYFLYPPEKPLTETAHERLATIA
QHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYIRMVGEAVADYRAAVDGGV
EEEPPLEVKIELPVDAHVPHDYAPGERLRLQAYRSIASANTEADIKAVREELTDRYGKLP
EPVENLLLVAGLRMLARACGVGEIVLQGPNIRFAPVELRESQELRLKRLYPRTVIKPTIH
QILVPRPTAGKIGGKPVVGRELLGWTGEFLTTILGS
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcacggtctgctcgatgccgtcgtacgtgacccggcgctcgccgaagcggtg
aaggctgccgcggacggtcaccgtatgcatgtcgacctggtcggcccgcccgccgcgcgc
cccttcgcggtggccgcgctggcccgcgaggcctcccgcccggtgctggcagtcacggcg
accgggcgggaggccgaggacctggcggccgcgctgcgctcgctgctgcccgaggagggc
atcgccgagtacccctcctgggagaccctgccgcacgagcggctctcgccccgctccgac
accgtgggccgcaggctcgcggtgctgcgcaggctggcccacccgacggacgacgacccg
gcgaccggaccggtctcggtcgtcgtcgcgcccatccgctccgtactccagccgcaggtc
aaggggctcggcgacctggagcccgtggcgctgcgcaccgggcagcgggccgatctgaac
gagatcgtggacagcctcgcggcagcggcgtactcccgggtcgaactggtcgagaagcgc
ggcgagttcgcggtccgcggcgggattctcgatgtctttccgccgaccgaggagcacccc
ctgcgggtggagttctggggcgacgacgtcgaggagatccggtacttcaaggtcgccgac
cagcgctcgctggaggtcgccgagcacgggctgtgggcggcgccctgccgcgagctgctg
ctgaccgaggacgtacggcagcgggccgccgcgctcgccgagctccaccccgagctgggt
gagctgctcggcaagatcgccgaggggatcgcggtcgagggcatggagtccctcgcgccg
gtcctcgtcgacgacatggagctgctgctcgacgtcctgccgaagggctcgatggccgtg
gtctgcgacccggagcgggtgcggaggcgggcggcggacctggtggcgacctcgcaggag
ttcctgcaggcgtcctgggcggcgacggccggcggcggcgaggccccgatcgacgtcggc
gcggcctcgctgcgggggatcgcggacgtacgggaccgggcgcgcgagctcggcatgatg
tggtggtccgtctcgccgttcgcggccgacgaggaactgtccgacgacaccctcaagctc
gggatgcacgcccccgagacgtaccgcggcgacaccgcgcgggcgctcgccgacaccaag
ggctggctggccgacggctggcggacggtgtacgtgacggaggcgcacgggcctgccgcc
cgtaccgtcgaggtgctgggcggcgaaggcatcgcggcccgtctcgacagggacctcgac
gagatctcgccgtccgtcgtccatgtcacgtgcagctcgatcgactacggcttcgtcgac
ccgggcctcaagctcgcggtgctgaccgagaccgatctgtcgggccagaaggcggccggc
aaggacggccagcggatgccgacccggcgccgcaagacgatcgaccctctcaccctggag
gcgggcgactacatcgtccacgagcagcacggtgtgggccgctacatcgagatggtgcag
cggacggtgcagaacgccacccgcgagtatctgctcgtcgagtacgccccggccaagcgc
ggccagcccggcgaccggctgtacatcccgaccgaccagctggagcaggtcaccaagtac
gtcggcggcgaggccccgaccctgcaccgcctcggcggcgcggactggacgaagaccaag
gcgcgcgcgaagaaggcggtcaaggagatcgccgccgacctgatcaagctctactccgcg
cggatggcggcccccggtcatgccttcggcccggactcgccctggcagcgggagctggag
gacgcgttcccgtatgtcgagacgcccgaccagctctccacgatcgccgaggtcaaggag
gacatggagaagacggtcccgatggaccggctggtctgcggcgacgtcggctacggaaag
acggagatcgcggtacgggcggcgttcaaggcggtccaggacggcaagcaggtcgcggtg
ctggtcccgacgacgctgctggtgcagcagcacttcggcaccttctccgagcggtactcc
caattcccggtgaacgtgcgggcgttgagccgtttccagtccgacacggaggcgaaggcg
acgctggaggggctgcgggacggcacggtcgacatcgtcatcggcacgcaccggctgttc
tccgcggagaccaagttcaaggacctgggactggtcgtcgtcgacgaggagcagcgcttc
ggtgtggagcacaaggagcagctgaagaaactccgcgccaacgtggacgtcctcaccatg
tccgcgacgccgattccccgcactttggagatggcggtcaccggcatccgcgagatgtcg
acaatcacgaccccgccggaggagcgccacccggtgttgaccttcgtcggcccgtacgag
gagaagcagctcggcgcggccatccgccgtgaactgctgcgcgagggccaggtcttctac
atccacaaccgggtggagtcgatcgaccgggccgcggcgcggctgcgcgagatcgtgccc
gaggcgcgcatcgcgaccgcccacggccagatgcccgagtcggcgctggagcaggtggtg
gtggacttctgggagaagaagttcgacgtgctcgtctcgacgacgatcgtcgagtccggc
atcgacatctccaacgccaacaccctgatcgtcgagcgcggcgacaacttcggcctctcg
cagctgcatcagctgcgcggccgcgtgggccgtggccgcgaccggggttacgcgtacttc
ctctacccgccggagaagccgctcaccgagaccgcgcacgagcgcctcgcgacgatcgcc
cagcacaccgagatgggcgcgggtatgtacgtggcgatgaaggacctggagatccgcggc
gcgggcaatctgctcggcggcgagcagtccggccatatcgcgggcgtcggcttcgacctg
tacatccgcatggtgggcgaggcggtcgccgactaccgcgcggcggtcgacggcggtgtg
gaggaggagcccccgctcgaggtcaagatcgagctcccggtcgacgcgcatgtcccgcac
gactacgcgccgggcgagcggctgcggctgcaggcgtaccgatcgatcgcgtcggcgaac
accgaggcggacatcaaggcggtccgcgaggaactgaccgaccgctacggcaagctcccg
gaaccggtcgagaacctgctcctggtggcgggcctgcggatgctggcgcgggcgtgcggg
gtgggcgagatcgtgctccagggcccgaacatccgcttcgcgccggtggagttgagggag
tcgcaggagctgcggctgaagcgcctctacccgcgcacggtcatcaagccgacgatccac
cagatcctggtaccgcgcccgacggcgggcaagatcggcggaaagccggtggtggggcgc
gaactgctcggatggacgggcgagttcctcacgacgattctcggctcctag
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