Streptomyces lunaelactis: SLUN_18855
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Entry
SLUN_18855 CDS
T06347
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
slk
Streptomyces lunaelactis
Brite
KEGG Orthology (KO) [BR:
slk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slk03019
]
SLUN_18855
Enzymes [BR:
slk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SLUN_18855
Messenger RNA biogenesis [BR:
slk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
SLUN_18855
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_19
AAA_22
nSTAND3
SLFN-g3_helicase
AAA_16
AAA_25
T2SSE
NACHT
ResIII
DUF6139
PhoH
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
AVZ73922
UniProt:
A0A2R4T487
LinkDB
All DBs
Position
4144901..4148839
Genome browser
AA seq
1312 aa
AA seq
DB search
MSTSLADLQTLLAGVSLRDAHRLGRRLEGARRIRKPEARQAVLDEIVTEAEQSAARTARR
AGRVPEITYPEQLPVSQRRDEILEAIRDHQVVIVAGETGSGKTTQIPKICLELGRGVRGM
IGHTQPRRIAARTVAERVAEELRTPLGEAVGWKVRFTDQVNQDATFVKLMTDGILLAEIQ
TDRELRAYDTIIIDEAHERSLNIDFLLGYLAQLLPKRPDLKVIITSATIDPQRFSRHFGE
APIVEVSGRTYPVEVRYRPLLEEDAEDSDRDQITAICDAVEELQSEGKGDILVFLSGERE
IRDTADALNKKQYRFTEVLPLYARLSHAEQHRVFQPHTGRRIVLATNVAETSLTVPGIKY
VIDPGTARISRYSHRTKVQRLPIERISQASANQRKGRCGRTSDGICVRLYDEDDFLSRPE
FTDAEILRTNLASVILQMTAAGLGDIEKFPFIDPPDHRNIRDGVQLLQELGAFDPVEKDP
KKKLTPLGRKLAQLPVDPRLARMVIEADKNGCVREVMVIAAALSIQDPRERPAEKQTQAD
QQHARFKDETSDFLAYLNLWRYIREQQKERGSSSFRRMCKQEYLNFLRIREWQDIYAQLR
TVAKQMGMHLEEPSAEAAAPEQSVHTSLLAGLLSHIGLKDTDKNEYLGARSAKFAIFPGS
ALFKKPPRFIMSAELVETSRLWARVNAKVEPEWIEPLAQHLIKRTYSEPHWEKDAAAVMA
YERVTLYGVPIVAQRKVNYGRIDPETSRDLFIRNALVEGDWRTHHKFFADNRKLLTEVEE
LEHRARRRDILVDDETLFDFYDQRVPEHVVSGAHFDSWWKHTRRDEPELLDFEREMLINE
KAGSVTKDDYPDSWRQGALTFRVTYQFEPGADADGVTVHIPLQVLNQVTSEGFDWQIPGL
REDVVMELIRSLPKPIRRHYVPAPNYAKAFLERAVPLQEPITATLARELQRMVGVPVTAD
DFGLDRVPDHLRITFRIVDERRKNLAEDKDLEALKLQLRPKARQALSKAAAAATSGPSGG
EGIERTGLTDWTMGTLTRVFETRRAGQPVKAYPALVDAGETVAVRLFDTEAEQQQAMWRG
TRKLILLNIPVNPAKFAADKLTNQHKLALSRNPHGSIQALFDDCAMAAADKLIADHGGPA
WDEESFRKLHDKVRADLVDATVRTVGQVQQILAAWQACERRLKATNSLTLINNVQDVRGQ
LAALMPAGFVTRTGLRRLPDLMRYLVAVDRRLQQMPTNVQRDTTRMAKVHEMQDEYAWLL
EQMPQGRPVPQEVLDIRWMIEELRVSYFAHALGTAQPVSDKRIVKAIDAAAP
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atgtctacttccctcgccgaccttcagaccctgctggccggggtgtcgctgcgcgacgcc
caccggctcggccgccgtctcgaaggcgcccgccgcatccgtaagcccgaggcgcggcag
gccgtgctggacgagatcgtcaccgaggccgagcagtccgctgcccgcaccgcccggcgc
gccggccgggtgcccgagatcacctaccccgagcagctgcccgtcagccagcggcgggac
gagatcctggaggcgatacgggaccaccaggtcgtgatcgtcgcgggcgagaccggctcg
ggcaagaccacccagatccccaagatctgcctggaactcggccggggcgtacgcggcatg
atcggccatacgcagccgcgccgcatcgccgcccgcaccgtcgccgaacgcgtcgcggaa
gagctccgcacccccctcggcgaggccgtcggctggaaggtccgcttcaccgaccaggtc
aaccaggacgcgaccttcgtcaagctgatgacggacggcatcctcctcgcggagatccag
accgaccgcgagctgcgcgcctacgacacgatcatcatcgacgaggcccatgagcggtct
ctcaacatcgacttcctgctcggctatctcgcgcagctgctgcccaagcgtccggatctc
aaggtgatcatcacctccgcgacgatcgacccgcagcgcttctcccgccacttcggcgaa
gccccgatcgtcgaggtcagcggccgtacgtaccccgtagaggtccgctaccgcccgctc
ctcgaagaggacgccgaggactccgaccgcgaccagatcaccgcgatctgcgacgccgtc
gaggagctgcagtccgagggcaagggcgacatcctcgtcttcctctccggtgagcgcgag
atccgcgacaccgcggacgcgctcaacaagaagcagtacagattcaccgaggtgctgccg
ctgtacgcacggctctcgcacgccgagcagcaccgcgtcttccagccgcacaccggccgc
cggatcgttctcgcgacgaacgtcgccgagacctccctcacggtccccggcatcaagtac
gtgatcgacccgggcaccgcccgtatctcccgctacagccaccgcaccaaggtccagcgc
ctgcccatcgagcggatctcgcaggccagtgccaatcagcgcaagggccgttgcggccgt
acctccgacggcatctgcgtccggctgtacgacgaggacgacttcctctcccgcccggag
ttcacggacgccgagatcctgcgtacgaatctggcctccgtcatccttcagatgaccgcg
gccggcctcggcgacatcgagaagttccccttcatcgaccccccggaccaccgcaacatc
cgcgacggtgtccaactcctgcaggaactgggcgcgttcgacccggtcgagaaggatccc
aagaagaagctgacgccgctcggccgcaagctcgcccagctccccgtcgacccgcgcctg
gcccgcatggtcatcgaggccgacaagaacggctgcgtacgcgaggtcatggtgatcgcg
gccgcgctctccatccaggacccgcgcgagcgccccgcagagaagcagacacaggcggac
cagcagcacgcgcgcttcaaggacgagacctccgacttcctcgcctacctcaacctctgg
cgctacatccgcgagcagcagaaggagcgcggctcctccagtttccgccggatgtgcaag
caggagtatctgaacttcctgcggatccgcgagtggcaggacatctacgcgcagttgcgt
acggtcgccaagcagatgggcatgcatctggaggagccctcggcggaggcggccgcgccc
gagcagtccgtccacacctcgttgctggcgggcctgctctcgcacatcggcctcaaggac
accgacaagaacgagtatctgggcgcccgcagcgccaagttcgcgatcttccccggctcc
gccctcttcaagaagcccccgcgcttcatcatgtcggccgagctcgtcgagacgtccagg
ctgtgggccagggtcaacgccaaggtcgagccggagtggatcgagccgctggcgcagcat
ctgatcaagcgcacctacagcgagccgcactgggagaaggacgcggcggcggtgatggcg
tacgagcgggtgacgctctacggcgtgccgatcgtcgcccagcgcaaggtgaactacggg
cggatcgacccggagacctcgcgcgatctcttcatccgcaacgcgctggtcgagggcgac
tggcgtacgcaccacaagttcttcgccgacaaccgcaagctcctcaccgaggtcgaggag
ctggagcaccgtgcccgccgccgcgacatcctcgtggacgacgagacgctcttcgacttc
tacgaccagcgggtgcccgagcacgtcgtgtccggtgcgcacttcgactcctggtggaag
cacacacgccgggacgagcccgaacttctcgatttcgagcgcgagatgctcatcaacgag
aaggccggatcggtcaccaaggacgactatccggactcctggcgccagggcgcgctgacg
ttccgggtgacgtaccagttcgagccgggggcggacgcggacggcgtcaccgtccacatc
cccctccaggtgctgaaccaggtcacctccgagggcttcgactggcagatcccgggcctg
cgcgaggacgtggtgatggagctgatccgctccctccccaaaccgatccgccggcactac
gtcccggctccgaactacgcgaaggcgttcctggagcgcgctgtgcccctccaggagccg
atcacggcgacgctcgcgcgcgagctgcagcgcatggtcggcgtcccggtcacggccgac
gacttcggtctcgaccgggtgcccgaccacttgaggatcacgttccggatcgtcgacgag
cgccgcaagaacctcgccgaggacaaggacctggaggcgctgaagctccagctgaggccg
aaggcccgccaggcactctccaaggccgccgcggccgccacgtccggcccctcggggggc
gagggcatcgagcgcacgggcctgacggactggacgatgggcaccctgacccgcgtcttc
gagacccgccgggccggccagccggtcaaggcgtaccccgctctcgtggacgccggtgag
acggtcgccgtacgcctcttcgacaccgaggccgagcagcagcaggcgatgtggcggggc
acccggaagctgatcctcctcaacatcccggtgaatcccgccaagttcgccgcggacaag
ctcaccaaccagcacaagctggccctgtcccgtaaccctcacggctcgatccaggcgctc
ttcgacgactgcgccatggccgcggcggacaagctgatcgcggaccacggcggtcccgcc
tgggacgaggaatcgttccggaagctgcatgacaaggtgcgcgccgacctcgtcgacgcg
actgtacggacggtgggccaggtgcagcagatcctggcggcctggcaggcgtgcgagcgc
cgcctgaaggccacgaacagcctgaccctgatcaacaacgtccaggacgtgcgcgggcag
ctggcggcgctgatgccggccggcttcgtcaccaggacgggcctgcggcggctgccggac
ctgatgcgctacctggtcgcggtggaccgccggctccagcagatgccgaccaatgtccag
cgcgacacgacgcgcatggcgaaggtccacgagatgcaggacgaatacgcctggctgctg
gaacagatgccgcagggccgcccggtcccgcaggaggtcctggacatccgctggatgatc
gaggagctgcgggtgagctacttcgcgcacgcgctgggcaccgcgcagccggtctccgac
aagcgcatcgtgaaggcgatcgacgcggcggcgccgtaa
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